Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCZ37_RS02410 Genome accession   NZ_CP022741
Coordinates   474354..475580 (-) Length   408 a.a.
NCBI ID   WP_047688859.1    Uniprot ID   A0A223MVC5
Organism   Vibrio qinghaiensis strain Q67     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469354..480580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS02370 (CCZ37_02365) rpsP 469693..469941 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CCZ37_RS02375 (CCZ37_02370) rimM 469971..470525 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CCZ37_RS02380 (CCZ37_02375) trmD 470553..471299 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CCZ37_RS02385 (CCZ37_02380) rplS 471341..471694 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CCZ37_RS02390 (CCZ37_02385) yacG 471775..471972 (-) 198 WP_094499651.1 DNA gyrase inhibitor YacG -
  CCZ37_RS02395 (CCZ37_02390) zapD 472062..472802 (-) 741 WP_010319527.1 cell division protein ZapD -
  CCZ37_RS02400 (CCZ37_02395) coaE 472835..473443 (-) 609 WP_094499652.1 dephospho-CoA kinase -
  CCZ37_RS02405 (CCZ37_02400) pilD 473434..474315 (-) 882 WP_094499653.1 A24 family peptidase Machinery gene
  CCZ37_RS02410 (CCZ37_02405) pilC 474354..475580 (-) 1227 WP_047688859.1 type II secretion system F family protein Machinery gene
  CCZ37_RS02415 (CCZ37_02410) pilB 475623..477311 (-) 1689 WP_094499654.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CCZ37_RS19560 (CCZ37_02415) - 477320..477739 (-) 420 WP_279627423.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CCZ37_RS02425 (CCZ37_02420) nadC 477999..478886 (-) 888 WP_010319533.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CCZ37_RS02430 (CCZ37_02425) ampD 479011..479562 (+) 552 WP_234826552.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CCZ37_RS02435 (CCZ37_02430) fldB 479584..480102 (-) 519 WP_010319535.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45283.64 Da        Isoelectric Point: 10.4379

>NTDB_id=242055 CCZ37_RS02410 WP_047688859.1 474354..475580(-) (pilC) [Vibrio qinghaiensis strain Q67]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASTHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=242055 CCZ37_RS02410 WP_047688859.1 474354..475580(-) (pilC) [Vibrio qinghaiensis strain Q67]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAGCAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTCAAGGCCAGAGACATCACCATTCTGACACGCCAATTAGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGTAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACTAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACTGCCAGCACTCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGTGAACAGTCAGGTAACTTGGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCACTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTCTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGCGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGGCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTAATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTTGATAATACCGTCGATAACTTAG
GTAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGTGGTTTGGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MVC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.75

98.039

0.87
  pilC Vibrio campbellii strain DS40M4

75.248

99.02

0.745
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.059

0.4
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment