Detailed information NTG0242054

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CCZ37_RS02405
• Genome accession: NZ_CP022741
• Coordinates: 473434..474315 (-)
• Length: 293 a.a.
• NCBI ID: WP_094499653.1
• Uniprot ID: A0A223MV94
• Organism: Vibrio qinghaiensis strain Q67
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 468434..479315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCZ37_RS02370 (CCZ37_02365)	rpsP	469693..469941 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
CCZ37_RS02375 (CCZ37_02370)	rimM	469971..470525 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
CCZ37_RS02380 (CCZ37_02375)	trmD	470553..471299 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CCZ37_RS02385 (CCZ37_02380)	rplS	471341..471694 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
CCZ37_RS02390 (CCZ37_02385)	yacG	471775..471972 (-)	198	WP_094499651.1	DNA gyrase inhibitor YacG	-
CCZ37_RS02395 (CCZ37_02390)	zapD	472062..472802 (-)	741	WP_010319527.1	cell division protein ZapD	-
CCZ37_RS02400 (CCZ37_02395)	coaE	472835..473443 (-)	609	WP_094499652.1	dephospho-CoA kinase	-
CCZ37_RS02405 (CCZ37_02400)	pilD	473434..474315 (-)	882	WP_094499653.1	A24 family peptidase	Machinery gene
CCZ37_RS02410 (CCZ37_02405)	pilC	474354..475580 (-)	1227	WP_047688859.1	type II secretion system F family protein	Machinery gene
CCZ37_RS02415 (CCZ37_02410)	pilB	475623..477311 (-)	1689	WP_094499654.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CCZ37_RS19560 (CCZ37_02415)	-	477320..477739 (-)	420	WP_279627423.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CCZ37_RS02425 (CCZ37_02420)	nadC	477999..478886 (-)	888	WP_010319533.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32908.21 Da
• Isoelectric Point: 7.2157

>NTDB_id=242054 CCZ37_RS02405 WP_094499653.1 473434..474315(-) (pilD) [Vibrio qinghaiensis strain Q67]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDMMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=242054 CCZ37_RS02405 WP_094499653.1 473434..474315(-) (pilD) [Vibrio qinghaiensis strain Q67]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATTCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTATTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTTGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATGATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A223MV94

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.083	98.294	0.758
pilD	Vibrio campbellii strain DS40M4	76.125	98.635	0.751
pilD	Acinetobacter nosocomialis M2	56.089	92.491	0.519
pilD	Acinetobacter baumannii D1279779	55.72	92.491	0.515
pilD	Neisseria gonorrhoeae MS11	48.54	93.515	0.454