Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BaGK_RS09395 Genome accession   NZ_CP022653
Coordinates   1852926..1854176 (+) Length   416 a.a.
NCBI ID   WP_010788650.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1847926..1859176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS09365 (BaGK_09365) yfmH 1848009..1849295 (+) 1287 WP_094232039.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BaGK_RS09370 (BaGK_09370) ymfI 1849352..1850080 (+) 729 WP_094232040.1 elongation factor P 5-aminopentanone reductase -
  BaGK_RS09375 (BaGK_09375) - 1850161..1850418 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  BaGK_RS09380 (BaGK_09380) - 1850548..1851339 (+) 792 WP_003328872.1 DUF3388 domain-containing protein -
  BaGK_RS09385 (BaGK_09385) rodZ 1851358..1852275 (+) 918 WP_010788648.1 cell shape determination protein RodZ -
  BaGK_RS09390 (BaGK_09390) pgsA 1852326..1852907 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BaGK_RS09395 (BaGK_09395) cinA 1852926..1854176 (+) 1251 WP_010788650.1 competence/damage-inducible protein A Machinery gene
  BaGK_RS09400 (BaGK_09400) recA 1854348..1855391 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  BaGK_RS09405 (BaGK_09405) - 1855676..1856905 (+) 1230 WP_094232041.1 serine hydrolase domain-containing protein -
  BaGK_RS09410 (BaGK_09410) rny 1857164..1858726 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45198.46 Da        Isoelectric Point: 4.8535

>NTDB_id=241234 BaGK_RS09395 WP_010788650.1 1852926..1854176(+) (cinA) [Bacillus atrophaeus strain GQJK17]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=241234 BaGK_RS09395 WP_010788650.1 1852926..1854176(+) (cinA) [Bacillus atrophaeus strain GQJK17]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTTTTACTCGGCCAGATCACCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGGCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTAGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTGGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACCGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGCTATGATGATACATCTCTTGTTAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCAGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.183

100

0.892
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment