Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SK637_RS04855 Genome accession   NZ_CP028415
Coordinates   917150..920425 (-) Length   1091 a.a.
NCBI ID   WP_033689000.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912150..925425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS04845 (SK637_00943) - 912307..913485 (-) 1179 WP_033688783.1 hypothetical protein -
  SK637_RS04850 (SK637_00944) rexA 913503..917153 (-) 3651 WP_033688784.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SK637_RS04855 (SK637_00945) rexB 917150..920425 (-) 3276 WP_033689000.1 ATP-dependent nuclease subunit B Machinery gene
  SK637_RS04860 (SK637_00946) - 920555..921226 (-) 672 WP_033688785.1 CPBP family intramembrane glutamic endopeptidase -
  SK637_RS04865 (SK637_00947) - 921445..922254 (+) 810 WP_033688786.1 Cof-type HAD-IIB family hydrolase -
  SK637_RS04870 (SK637_00948) - 922396..923304 (+) 909 WP_033688787.1 ATP-binding cassette domain-containing protein -
  SK637_RS04875 (SK637_00949) - 923315..924067 (+) 753 WP_033688788.1 ABC transporter permease -
  SK637_RS04880 (SK637_00950) - 924108..924986 (-) 879 WP_033688789.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124827.49 Da        Isoelectric Point: 5.3622

>NTDB_id=241235 SK637_RS04855 WP_033689000.1 917150..920425(-) (rexB) [Streptococcus mitis strain SK637]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLILNDLPVKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIDLYHEMTKAQMNFLDLESLTDEDKRSDLLLIFEKVTAYLNE
EQLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHGKGVEIIIGAYASKKAYTSPFPEGNLYQAS
VEFLHHLATKYQTPAQDCSQTHERMDSFDKASRLLESSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSNLSYKHFRILLGDVASYRLSLKTIFDQYQIPFYLGKSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFDLERLNALRLLILTPLETLFASRKQKAENLLQKWNSFLKEGAVTK
QLQDLTATMEVLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNLNQATEEGAQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELIHFGFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGETSETEQDLTFIKVLARVMGKKLDQQGLENP
AIPTSPSSKQLAKDTLQALYPADQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPD
EDSFDHRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESNHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLTDGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=241235 SK637_RS04855 WP_033689000.1 917150..920425(-) (rexB) [Streptococcus mitis strain SK637]
ATGAAATTACTTTATACTGATATTCGTACTTCTTTGACAGAAATTCTAACCAGAGAGGCGGAGGAGCTAGTTGCTGCAGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCGCAGATGGCTCGTTATCTGATCTTGAATGACCTACCTGTCAAAACCAGT
CTAGATGACATCGGTCTTGGGATGGCCTTTTACAAATGCCTTGCCGAACTTGATCCTAAGGATTTACGTGTTTATGGAGC
TATCAAGCAGGATCCTCAATTTATCCAGCAGTTAATTGATCTTTATCACGAGATGACCAAGGCTCAGATGAACTTTTTAG
ACTTGGAGAGTTTGACGGATGAGGACAAGCGATCTGATTTACTCTTGATTTTTGAGAAAGTAACGGCCTACCTCAATGAA
GAGCAGTTAGCTCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAAGTTAGTAGTGATTTTACTCA
AATCGCCTTGGTTATTGATGGCTTTACCCGTTTTTCTGCCGAGGAAGAGCGAATTGTGGACCTACTTCATGGCAAGGGTG
TTGAGATTATCATTGGAGCCTATGCTAGTAAGAAAGCTTATACCAGTCCATTCCCTGAAGGTAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATTTAGCTACTAAATACCAAACGCCTGCTCAGGATTGTTCTCAAACTCATGAGCGGATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTAGAGTCTTCTTACGACTTTTCAGAACTCACTTTGGATGTCGATGAGAAGGATCGTG
AAAACTTACAAATCTGGTCTTGCTTGACGCAAAAGGAAGAGTTAGAGTTGGTAGCCCGTAGCATTCGTCAGAAATTGCAC
GAGAACTCAAATCTGAGTTACAAGCATTTTCGTATTCTATTGGGGGATGTAGCGTCTTATCGATTATCTCTAAAAACAAT
TTTTGACCAGTATCAGATTCCTTTCTATCTAGGCAAAAGCGAATCCATGGCGCACCACCCTTTGACACAGTTTGTCGAAT
CTATTTTAGCTTTGAAACGCTACCGTTTTCGTCAGGAAGATTTGATTAACCTTCTTAGAACTGGTCTGTATACCGACCTT
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGTTATCTTGGTATCAATGGCTTACCAGCCTTTCAGCAAACCTT
TACCAAATCCCACCATGGAAAATTTGATTTAGAACGTTTAAATGCTCTTCGTCTGCTTATTTTAACACCTCTTGAGACTC
TTTTTGCTAGCCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAACTCTTTTCTAAAAGAAGGAGCTGTGACCAAG
CAGTTGCAAGATTTGACAGCCACTATGGAAGTTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGTCATGT
TTTAGAGCAATTTGCGACTGTTTTTGCTGGTTCACAGGTTAGTCTAGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCGACAGTGGATACTGTCCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACG
GCTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATCGCGCAGAATACCAGCCTTTTGACAGATGA
AGAAAGGCAAAACCTAAACCAAGCGACAGAGGAAGGGGCACAATTGCTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTATACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGGTCTTGTCGGCTCCAAGCCTCTTTAATGAAAGTGAA
AGTAAGGAATCAGCCTATCTTCAAGAGCTGATCCATTTTGGATTTAGTCGAAAAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGATATGGGGTCCTATCACAGTCTTTTGTCTAGTCTGGTCGCCTATCACCAGCAGGGCGAGACGAGTGAGA
CTGAGCAAGATTTGACCTTTATTAAGGTTCTGGCGCGTGTCATGGGTAAAAAACTAGACCAGCAAGGTCTGGAAAATCCA
GCCATCCCAACCAGTCCAAGCAGTAAGCAGTTGGCTAAGGACACCTTACAAGCTCTCTATCCTGCTGATCAGGAGTTTTA
TCTGTCTACATCTGGTTTGACGGAGTTTTACCGAAACCAATACAGTTATTTCCTCCGCTACGTTTTAGGCTTGCAGGAAG
AATTACGTTTGCGTCCTGATGCCCGTAGTCACGGAAATTTCTTGCACCGTATCTTTGAACGCGCCTTGCAGTTACCTGAT
GAAGATTCCTTTGACCACCGTCTAGAGCAAGCTATTCAAGAAACCAGTCAAGAACGCGAATTTGAAGCCATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACAAAGGAAGTTTTGCTTGATGTTGCACGGACAACTGGTCATATTCTCCGACACAATCCAG
CCATCGAAACTATCAAAGAAGAGGCGAACTTTGGTGGGAAAGAGCAGGCCTTTATTCAATTGGATAACGGTCGCAGTGTC
TTTGTACGAGGTAAGGTTGACCGCATTGACCGATTGAAAGCTGATGGGGCGATTGGAGTGGTAGACTACAAATCCAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCTCAGTTGCCAACCTATTTAGCTGCCTTAAAAAGAGAAG
GGGAGCAGAACTTTTTTGGTGCTATGTACTTGGAAATGGCTGAGCCCGTCCAATCTCTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCTAGCAAGTCTATGAAATACCAAGGACTCTTTTTAGAAAAAGAAAGTAATCATTTGGGCGAATT
TTATAACAAAAACAAGGCTAATCAGCTGACAGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCACCTTTACAAGA
AAGCAGCTGAGAAGATTTTAGAAGGTCAGTTCGCCATTAACCCTTATACTGAAAATGGCAGAAGTATTGCACCGTATGTT
CAGCAACACCAAGCCATCACAGGCTTTGAAGCCAATTACCACTTGGGTCAAGCCCGTTTTCTAGAAAAGTTAGACTTAAC
TGATGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

94.134

100

0.941

Multiple sequence alignment