Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OTERR_RS02725 Genome accession   NZ_CP022579
Coordinates   589987..591213 (-) Length   408 a.a.
NCBI ID   WP_149424783.1    Uniprot ID   A0A5C1E709
Organism   Oryzomicrobium terrae strain TPP412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584987..596213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTERR_RS02695 (OTERR_05360) - 585099..585608 (-) 510 WP_149424779.1 barstar family protein -
  OTERR_RS02700 (OTERR_05370) - 585639..586070 (-) 432 WP_082396550.1 ribonuclease domain-containing protein -
  OTERR_RS02705 (OTERR_05380) aspS 586137..587927 (-) 1791 WP_149424780.1 aspartate--tRNA ligase -
  OTERR_RS02710 (OTERR_05390) - 587976..588635 (-) 660 WP_149424781.1 DUF502 domain-containing protein -
  OTERR_RS02715 (OTERR_05400) - 588705..588965 (-) 261 WP_054620053.1 zinc ribbon domain-containing protein -
  OTERR_RS02720 (OTERR_05410) pilD 589118..589981 (-) 864 WP_149424782.1 A24 family peptidase Machinery gene
  OTERR_RS02725 (OTERR_05420) pilC 589987..591213 (-) 1227 WP_149424783.1 type II secretion system F family protein Machinery gene
  OTERR_RS02730 (OTERR_05430) pilB 591234..592958 (-) 1725 WP_149424784.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OTERR_RS02735 (OTERR_05440) - 593159..594424 (-) 1266 WP_149424785.1 HlyC/CorC family transporter -
  OTERR_RS02740 (OTERR_05450) ccsA 594449..595300 (-) 852 WP_246154290.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44784.94 Da        Isoelectric Point: 9.9792

>NTDB_id=240943 OTERR_RS02725 WP_149424783.1 589987..591213(-) (pilC) [Oryzomicrobium terrae strain TPP412]
MASPPRKPATQLKESVFLWEGKNKEGKIVRGEMRAPSETVVNASLRRQAILVTKITKQRFKRGGKVTDKDITLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVAKLLLDIKADVETGSSLSQAFRKYPLYFDQLFCNLIAAGEQAGILETLLDRLATYK
EKILAIKSKIKSALFYPIAVIVVAFVITAVIMIFVIPAFKEVFKSFGADLPAPTLMVMAISDFFVEYWYAIFGLIGGGIY
AFFAAWKRSEKVQMVMDRFMLRLPIFGSIVRKSVIARWTRTLSTMFAAGVPLVESLDSVGGAAGNYVYKIATKQIQNEVS
TGTSLTSSMQNTNLFPNMAIQMVAIGEESGALDSMLGKIADFFEQEVDDAVEALSSLMEPMIMVILGGLIGGMVVAMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=240943 OTERR_RS02725 WP_149424783.1 589987..591213(-) (pilC) [Oryzomicrobium terrae strain TPP412]
ATGGCCAGCCCCCCGCGCAAACCCGCCACCCAACTGAAGGAAAGCGTTTTCCTGTGGGAAGGCAAAAACAAGGAAGGCAA
GATCGTCCGCGGGGAAATGCGCGCCCCCAGCGAAACCGTGGTCAACGCCTCGCTGCGACGGCAAGCCATTCTGGTGACGA
AAATCACCAAACAACGCTTCAAACGGGGTGGCAAGGTCACCGACAAGGACATCACCCTGTTCACCCGGCAGCTGGCGACG
ATGATGAAATCTGGCGTGCCGCTGCTCCAGTCCTTCGATATCGTCGGCCGGGGTCACTCCAATCCGGCCGTGGCCAAGTT
ACTGCTCGACATCAAGGCCGACGTGGAAACCGGCAGTTCCCTGTCCCAGGCTTTTCGCAAATACCCGCTGTATTTCGATC
AGCTGTTCTGCAACCTGATCGCCGCCGGCGAGCAGGCCGGCATCCTGGAAACCTTGCTCGATCGCTTGGCGACCTACAAG
GAAAAGATCTTGGCTATCAAGAGCAAGATCAAGTCCGCCCTGTTTTACCCGATCGCCGTAATCGTGGTCGCTTTCGTGAT
CACCGCCGTGATCATGATTTTCGTTATTCCGGCTTTCAAGGAAGTATTCAAGAGCTTTGGCGCCGACCTACCAGCCCCAA
CACTTATGGTCATGGCCATCTCCGACTTCTTCGTCGAGTATTGGTACGCGATATTCGGTTTGATCGGTGGGGGCATATAC
GCATTTTTTGCCGCATGGAAGCGCTCGGAGAAGGTGCAAATGGTAATGGACCGTTTCATGCTACGCCTGCCCATTTTTGG
CAGCATCGTGCGTAAATCAGTCATCGCGCGCTGGACCCGCACCCTATCCACCATGTTTGCCGCCGGCGTTCCCCTCGTCG
AATCCCTCGACTCGGTCGGCGGTGCGGCCGGGAACTACGTTTACAAGATTGCCACCAAGCAGATCCAGAACGAAGTCAGC
ACCGGTACCAGCCTCACCTCTTCCATGCAGAACACCAACCTGTTCCCCAACATGGCCATTCAAATGGTGGCCATTGGTGA
AGAATCCGGCGCCCTGGACTCGATGCTCGGCAAGATCGCCGACTTCTTCGAGCAGGAAGTGGATGACGCCGTGGAAGCGC
TGTCCAGCCTGATGGAACCGATGATCATGGTGATTCTCGGCGGCCTGATCGGCGGCATGGTGGTTGCCATGTACCTCCCC
ATCTTCAAATTGGGCTCGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1E709

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.303

97.059

0.537
  pilC Pseudomonas stutzeri DSM 10701

54.5

98.039

0.534
  pilG Neisseria gonorrhoeae MS11

53.652

97.304

0.522
  pilG Neisseria meningitidis 44/76-A

53.401

97.304

0.52
  pilC Acinetobacter baumannii D1279779

52.882

97.794

0.517
  pilC Acinetobacter baylyi ADP1

51.75

98.039

0.507
  pilC Vibrio campbellii strain DS40M4

39.512

100

0.397
  pilC Vibrio cholerae strain A1552

40.152

97.059

0.39

Multiple sequence alignment