Detailed information NTG0240942

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OTERR_RS02720
• Genome accession: NZ_CP022579
• Coordinates: 589118..589981 (-)
• Length: 287 a.a.
• NCBI ID: WP_149424782.1
• Uniprot ID: A0A5C1E6S9
• Organism: Oryzomicrobium terrae strain TPP412
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 584118..594981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OTERR_RS02690 (OTERR_05350)	nudB	584632..585084 (-)	453	WP_223115988.1	dihydroneopterin triphosphate diphosphatase	-
OTERR_RS02695 (OTERR_05360)	-	585099..585608 (-)	510	WP_149424779.1	barstar family protein	-
OTERR_RS02700 (OTERR_05370)	-	585639..586070 (-)	432	WP_082396550.1	ribonuclease domain-containing protein	-
OTERR_RS02705 (OTERR_05380)	aspS	586137..587927 (-)	1791	WP_149424780.1	aspartate--tRNA ligase	-
OTERR_RS02710 (OTERR_05390)	-	587976..588635 (-)	660	WP_149424781.1	DUF502 domain-containing protein	-
OTERR_RS02715 (OTERR_05400)	-	588705..588965 (-)	261	WP_054620053.1	zinc ribbon domain-containing protein	-
OTERR_RS02720 (OTERR_05410)	pilD	589118..589981 (-)	864	WP_149424782.1	A24 family peptidase	Machinery gene
OTERR_RS02725 (OTERR_05420)	pilC	589987..591213 (-)	1227	WP_149424783.1	type II secretion system F family protein	Machinery gene
OTERR_RS02730 (OTERR_05430)	pilB	591234..592958 (-)	1725	WP_149424784.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OTERR_RS02735 (OTERR_05440)	-	593159..594424 (-)	1266	WP_149424785.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 30640.53 Da
• Isoelectric Point: 7.3464

>NTDB_id=240942 OTERR_RS02720 WP_149424782.1 589118..589981(-) (pilD) [Oryzomicrobium terrae strain TPP412]
MDIATFFTHAPTAWIAFATVLGLLVGSFLNVVIHRLPLMMERDWQVQCAELRGETAPEQPSLTLSSPRSRCPSCGHGIHA
WENIPIISWLLLRGKCSACAAPISMRYPLVEALTGLLTGLAAWHFGFTAMAAGAIVFTWALIALAGIDLDTQLLPDSITL
PLLWLGLALALFPVFADLPSAVIGAMAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWMGWQMLPLVILLSSLVGA
VVGIALILGAGRGRSVPIPFGPYLAAAGLIALYAGKALTNHYLALVL

Nucleotide

• Length: 864 bp

>NTDB_id=240942 OTERR_RS02720 WP_149424782.1 589118..589981(-) (pilD) [Oryzomicrobium terrae strain TPP412]
ATGGACATCGCAACCTTCTTTACCCACGCCCCAACTGCCTGGATCGCATTCGCCACCGTTCTCGGCCTGCTCGTCGGCAG
TTTCCTCAATGTCGTCATCCACCGCCTGCCCCTGATGATGGAACGGGACTGGCAGGTGCAATGTGCCGAGCTGCGCGGCG
AAACCGCCCCCGAGCAGCCCTCCCTCACCCTGTCCAGCCCCCGTTCCCGCTGCCCGTCTTGCGGGCATGGCATCCACGCC
TGGGAAAACATTCCCATAATCAGCTGGCTGCTGTTGCGCGGCAAATGCTCGGCCTGCGCCGCCCCCATTTCGATGCGCTA
CCCCCTGGTGGAGGCCTTGACCGGCCTGCTCACCGGTCTGGCTGCCTGGCATTTTGGCTTTACCGCCATGGCCGCCGGCG
CCATCGTATTTACTTGGGCCCTCATCGCCCTGGCTGGAATCGACCTGGACACCCAGCTGCTTCCGGACTCCATCACGCTG
CCGTTGCTCTGGCTGGGACTCGCCCTCGCCCTCTTTCCCGTGTTTGCCGACCTGCCCTCGGCCGTCATCGGCGCCATGGC
CGGCTATCTGTCCCTCTGGAGCGTGTATTGGTTGTTCAAGCTGCTGACGGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGCTCGCCGCCCTGGGAGCCTGGATGGGCTGGCAGATGCTGCCCTTGGTCATCCTGCTGTCGTCGCTGGTGGGAGCC
GTCGTCGGCATTGCCCTGATCCTGGGCGCCGGGCGTGGGCGCAGCGTCCCGATTCCGTTCGGCCCCTATCTGGCAGCCGC
CGGATTGATCGCCCTGTACGCAGGAAAAGCACTCACCAACCACTACCTGGCCCTGGTTCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A5C1E6S9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.69	98.955	0.561
pilD	Vibrio cholerae strain A1552	56.184	98.606	0.554
pilD	Acinetobacter nosocomialis M2	52.265	100	0.523
pilD	Acinetobacter baumannii D1279779	51.916	100	0.519
pilD	Neisseria gonorrhoeae MS11	52.256	92.683	0.484