Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C7Y67_RS02730 | Genome accession | NZ_CP028342 |
| Coordinates | 528489..528947 (-) | Length | 152 a.a. |
| NCBI ID | WP_025547614.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus isolate R13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 523489..533947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7Y67_RS02710 (C7Y67_02710) | coaE | 524001..524615 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| C7Y67_RS02715 (C7Y67_02715) | pilD | 524616..525485 (-) | 870 | WP_057619578.1 | A24 family peptidase | Machinery gene |
| C7Y67_RS02720 (C7Y67_02720) | pilC | 525550..526773 (-) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| C7Y67_RS02725 (C7Y67_02725) | pilB | 526798..528483 (-) | 1686 | WP_057619577.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C7Y67_RS02730 (C7Y67_02730) | pilA | 528489..528947 (-) | 459 | WP_025547614.1 | pilin | Machinery gene |
| C7Y67_RS02735 (C7Y67_02735) | nadC | 529211..530098 (-) | 888 | WP_025547616.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| C7Y67_RS02740 (C7Y67_02740) | ampD | 530191..530742 (+) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| C7Y67_RS02745 (C7Y67_02745) | pdhR | 531148..531915 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15929.00 Da Isoelectric Point: 5.1482
>NTDB_id=240749 C7Y67_RS02730 WP_025547614.1 528489..528947(-) (pilA) [Vibrio parahaemolyticus isolate R13]
MKQSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGSSTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFEFDSSGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKQSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGSSTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFEFDSSGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=240749 C7Y67_RS02730 WP_025547614.1 528489..528947(-) (pilA) [Vibrio parahaemolyticus isolate R13]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCTGATGGTTCTAGTACAAATGAAACTGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGCTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGA
GTTTGATAGCTCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCTGATGGTTCTAGTACAAATGAAACTGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGCTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGA
GTTTGATAGCTCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.154 |
100 |
0.474 |
| pilA | Vibrio cholerae strain A1552 |
46.154 |
100 |
0.474 |
| pilA | Vibrio cholerae C6706 |
46.154 |
100 |
0.474 |
| pilA | Pseudomonas aeruginosa PAK |
41.83 |
100 |
0.421 |
| pilA | Acinetobacter baumannii strain A118 |
42.759 |
95.395 |
0.408 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.284 |
88.158 |
0.382 |
| pilA | Acinetobacter nosocomialis M2 |
38.514 |
97.368 |
0.375 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.426 |
92.763 |
0.375 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
32.386 |
100 |
0.375 |