Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BSG32_RS07030 Genome accession   NZ_CP022552
Coordinates   1389969..1390253 (+) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1381423..1391513 1389969..1390253 within 0


Gene organization within MGE regions


Location: 1381423..1391513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS07000 (BSG32_07010) tig 1381423..1382727 (+) 1305 WP_005460612.1 trigger factor -
  BSG32_RS07005 (BSG32_07015) clpP 1382833..1383459 (+) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  BSG32_RS07010 (BSG32_07020) clpX 1383531..1384811 (+) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  BSG32_RS07015 (BSG32_07025) lon 1384943..1387294 (+) 2352 WP_015296438.1 endopeptidase La -
  BSG32_RS07020 (BSG32_07030) - 1387487..1387759 (+) 273 WP_005382341.1 HU family DNA-binding protein -
  BSG32_RS07025 (BSG32_07035) ppiD 1387959..1389818 (+) 1860 WP_021449595.1 peptidylprolyl isomerase -
  BSG32_RS07030 (BSG32_07040) comEA 1389969..1390253 (+) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  BSG32_RS07035 (BSG32_07045) rrtA 1390344..1390895 (-) 552 WP_021449593.1 rhombosortase -
  BSG32_RS07040 (BSG32_07050) - 1390899..1391513 (+) 615 WP_021449592.1 tRNA-uridine aminocarboxypropyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=240661 BSG32_RS07030 WP_021449594.1 1389969..1390253(+) (comEA) [Vibrio parahaemolyticus strain MAVP-R]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=240661 BSG32_RS07030 WP_021449594.1 1389969..1390253(+) (comEA) [Vibrio parahaemolyticus strain MAVP-R]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362

Multiple sequence alignment