Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GK_RS06915 Genome accession   NC_006510
Coordinates   1311044..1312288 (+) Length   414 a.a.
NCBI ID   WP_011230794.1    Uniprot ID   S4NH19
Organism   Geobacillus kaustophilus HTA426     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1306044..1317288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK_RS06885 (GK1288) yfmH 1306143..1307432 (+) 1290 WP_011230788.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GK_RS06890 (GK1289) ymfI 1307487..1308203 (+) 717 WP_021322287.1 elongation factor P 5-aminopentanone reductase -
  GK_RS06895 (GK1290) - 1308266..1308514 (+) 249 WP_011230790.1 DUF3243 domain-containing protein -
  GK_RS06900 (GK1291) - 1308646..1309437 (+) 792 WP_011230791.1 DUF3388 domain-containing protein -
  GK_RS06905 (GK1292) - 1309464..1310357 (+) 894 WP_011230792.1 helix-turn-helix domain-containing protein -
  GK_RS06910 (GK1293) pgsA 1310438..1311016 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GK_RS06915 (GK1294) cinA 1311044..1312288 (+) 1245 WP_011230794.1 competence/damage-inducible protein A Machinery gene
  GK_RS06920 (GK1295) - 1312466..1312753 (+) 288 Protein_1296 DNA recombination/repair protein RecA -
  GK_RS06925 (GK1296) - 1313754..1315403 (+) 1650 WP_231847829.1 group II intron reverse transcriptase -
  GK_RS06930 recA 1315476..1316291 (+) 816 WP_021322290.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44870.69 Da        Isoelectric Point: 6.0113

>NTDB_id=24039 GK_RS06915 WP_011230794.1 1311044..1312288(+) (cinA) [Geobacillus kaustophilus HTA426]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
SAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTALPGASQVVQGGVVCYTNGVKEQVLGIPRP
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLMLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=24039 GK_RS06915 WP_011230794.1 1311044..1312288(+) (cinA) [Geobacillus kaustophilus HTA426]
TTGAACGCGGAGATCATTGCCGTTGGCTCTGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTTGAGCAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTGACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
TCGGCTATTTTGGCGCGTGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCCTCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCCCG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCGACTGTCCACCGTCTGATGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S4NH19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.658

98.792

0.589
  cinA Streptococcus mitis SK321

50.914

92.512

0.471
  cinA Streptococcus mitis NCTC 12261

50.914

92.512

0.471
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389

Multiple sequence alignment