Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C7M23_RS16320 Genome accession   NZ_CP028209
Coordinates   3209452..3209901 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM102745     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204452..3214901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS16290 (C7M23_03202) sepM 3204534..3205556 (-) 1023 WP_131227384.1 protease DdcP Regulator
  C7M23_RS16295 (C7M23_03203) ylbK 3205558..3206340 (-) 783 WP_003232221.1 patatin family protein -
  C7M23_RS16300 (C7M23_03204) spoVV 3206521..3207747 (+) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  C7M23_RS16305 (C7M23_03205) coaD 3207758..3208243 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M23_RS16310 (C7M23_03206) rsmD 3208248..3208802 (-) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M23_RS16315 (C7M23_03207) ylbG 3209125..3209397 (-) 273 WP_015715839.1 YlbG family protein -
  C7M23_RS16320 (C7M23_03208) ylbF 3209452..3209901 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M23_RS16325 (C7M23_03209) ylbE 3210017..3210256 (-) 240 WP_003232231.1 YlbE-like family protein -
  C7M23_RS16330 (C7M23_03210) ylbD 3210272..3210670 (-) 399 WP_003232233.1 YlbD family protein -
  C7M23_RS16335 (C7M23_03211) ylbC 3210902..3211942 (-) 1041 WP_131227383.1 CAP domain-containing protein -
  C7M23_RS16340 (C7M23_03212) ylbB 3212026..3212472 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C7M23_RS16345 (C7M23_03213) ylbA 3212612..3212974 (+) 363 WP_003232238.1 YugN family protein -
  C7M23_RS16350 (C7M23_03214) ctaG 3213006..3213899 (-) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  C7M23_RS16355 (C7M23_03215) ctaF 3213927..3214259 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C7M23_RS16360 (C7M23_03216) ctaE 3214262..3214885 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=239795 C7M23_RS16320 WP_003221370.1 3209452..3209901(-) (ylbF) [Bacillus subtilis strain SRCM102745]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=239795 C7M23_RS16320 WP_003221370.1 3209452..3209901(-) (ylbF) [Bacillus subtilis strain SRCM102745]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment