Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PBPR_RS18135 Genome accession   NC_006370
Coordinates   4042957..4044054 (-) Length   365 a.a.
NCBI ID   WP_011220069.1    Uniprot ID   -
Organism   Photobacterium profundum SS9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4037957..4049054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS18095 (PBPRA3569) - 4038003..4038551 (+) 549 WP_011220062.1 gamma carbonic anhydrase family protein -
  PBPR_RS18100 (PBPRA3570) - 4038548..4038811 (-) 264 WP_011220063.1 DUF1488 domain-containing protein -
  PBPR_RS18105 (PBPRA3571) aroE 4038822..4039643 (-) 822 WP_041394594.1 shikimate dehydrogenase -
  PBPR_RS18110 (PBPRA3572) hemF 4039734..4040639 (-) 906 WP_011220065.1 oxygen-dependent coproporphyrinogen oxidase -
  PBPR_RS18115 (PBPRA3573) - 4040665..4041222 (-) 558 WP_065814475.1 L-threonylcarbamoyladenylate synthase -
  PBPR_RS18120 (PBPRA3574) purE 4041303..4041809 (-) 507 WP_041394595.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PBPR_RS18125 (PBPRA3575) - 4041887..4042444 (-) 558 WP_041394596.1 type I DNA topoisomerase -
  PBPR_RS18130 (PBPRA3576) - 4042481..4042954 (-) 474 WP_006233394.1 DUF494 family protein -
  PBPR_RS18135 (PBPRA3577) dprA 4042957..4044054 (-) 1098 WP_011220069.1 DNA-processing protein DprA Machinery gene
  PBPR_RS18140 (PBPRA3578) - 4044051..4045109 (-) 1059 WP_011220070.1 LysM peptidoglycan-binding domain-containing protein -
  PBPR_RS18145 (PBPRA3579) def 4045463..4045972 (+) 510 WP_011220071.1 peptide deformylase -
  PBPR_RS18150 (PBPRA3580) fmt 4045989..4046933 (+) 945 WP_011220072.1 methionyl-tRNA formyltransferase -
  PBPR_RS18155 (PBPRA3581) rsmB 4047004..4048299 (+) 1296 WP_011220073.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39349.21 Da        Isoelectric Point: 6.0984

>NTDB_id=23897 PBPR_RS18135 WP_011220069.1 4042957..4044054(-) (dprA) [Photobacterium profundum SS9]
MMTTLESWLILAAVPYLGGCRISKLLQYATPIELIEMPAEQLRAIGLSSAQVAALHNPKRQRIDHALIWAEQNNHTILTL
DSPFYPALLKEISSAPPLLFVRGEDRWLREPQLAVIGSRSASLDGREAAYDFSAALVAANYVVTSGLALGIDGQAHYGAL
KNGGATVAVLGSGLNHIYPASHRTLASQIIEQGALVSEFWPDEKPRPQNFPRRNRVISGLSVGVLVIEAAERSGSLITAR
YALDQGRDVFALPGSIHNPGSRGCNALIKSGAKLVESPVDIFEEVGALTECAINSQMNLSLPQPENEELPFSAVLATVGK
EAIPVDVVAERCKLPIHEVMMQLLDLELQGVVSTVPGGYIRTRRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=23897 PBPR_RS18135 WP_011220069.1 4042957..4044054(-) (dprA) [Photobacterium profundum SS9]
ATGATGACAACATTAGAAAGTTGGTTAATTCTAGCTGCGGTCCCATATTTGGGTGGTTGTAGAATTAGCAAATTATTGCA
ATATGCGACGCCGATAGAATTAATCGAGATGCCCGCAGAGCAACTTCGTGCCATTGGCTTATCATCAGCGCAAGTTGCAG
CATTGCATAACCCCAAACGGCAACGCATTGATCATGCACTAATATGGGCTGAGCAAAATAATCACACCATTCTTACCTTA
GACTCTCCTTTTTACCCTGCTTTATTAAAAGAAATATCATCTGCCCCGCCTTTGCTGTTTGTTCGTGGTGAAGATCGTTG
GTTACGTGAACCCCAACTGGCTGTTATTGGCAGCCGTTCTGCCAGTCTTGATGGTCGTGAAGCGGCGTATGATTTCTCTG
CTGCATTAGTTGCCGCTAATTATGTTGTTACCAGTGGCTTAGCATTAGGCATCGATGGTCAAGCGCATTATGGCGCATTA
AAAAATGGTGGTGCGACAGTTGCGGTATTAGGTTCAGGACTTAATCATATTTACCCTGCAAGTCATCGAACCCTAGCCAG
TCAAATTATCGAGCAAGGTGCACTTGTTTCTGAGTTTTGGCCCGATGAAAAACCACGGCCACAAAATTTCCCTCGTCGTA
ATAGAGTGATCAGCGGGCTGTCGGTTGGTGTTCTTGTTATAGAGGCAGCAGAGCGAAGTGGCTCATTAATTACGGCACGC
TATGCTTTAGATCAAGGACGAGATGTTTTTGCTTTACCCGGTTCGATTCATAATCCTGGCAGTCGAGGTTGTAACGCCTT
GATAAAATCTGGTGCTAAACTGGTAGAAAGTCCGGTCGATATATTTGAAGAGGTAGGTGCGCTGACGGAATGCGCAATAA
ATAGCCAAATGAACTTGTCGTTGCCACAACCTGAAAATGAAGAATTGCCATTTTCAGCCGTGTTGGCTACCGTAGGCAAA
GAAGCAATACCCGTTGATGTGGTTGCTGAACGCTGTAAACTGCCCATACATGAAGTTATGATGCAATTACTAGATTTAGA
ATTGCAAGGCGTTGTGAGTACAGTGCCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)

DprA winged helix domain (DprA_WH)

(308-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

53.315

99.178

0.529
  dprA Vibrio cholerae strain A1552

50

100

0.501
  dprA Glaesserella parasuis strain SC1401

47.34

100

0.488
  dprA Legionella pneumophila strain ERS1305867

43.094

99.178

0.427
  dprA Haemophilus influenzae Rd KW20

48.649

81.096

0.395
  dprA Neisseria meningitidis strain C311

37.018

100

0.395
  dprA Neisseria meningitidis MC58

37.018

100

0.395
  dprA Neisseria gonorrhoeae MS11

35.917

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.381
  dprA Acinetobacter baylyi ADP1

35.884

100

0.373

Multiple sequence alignment