Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   CC204_RS06680 Genome accession   NZ_CP021874
Coordinates   1389901..1390185 (-) Length   94 a.a.
NCBI ID   WP_088269464.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384901..1395185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS06640 - 1384911..1385189 (+) 279 WP_088269457.1 hypothetical protein -
  CC204_RS06645 - 1385398..1385874 (+) 477 WP_088269458.1 universal stress protein -
  CC204_RS06650 - 1385944..1387131 (-) 1188 WP_088269459.1 acetate kinase -
  CC204_RS06655 - 1387158..1388165 (-) 1008 WP_088269460.1 class I SAM-dependent methyltransferase -
  CC204_RS06660 comGG 1388396..1388773 (-) 378 WP_227011238.1 competence type IV pilus minor pilin ComGG -
  CC204_RS06665 comGF 1388730..1389197 (-) 468 WP_088269461.1 competence type IV pilus minor pilin ComGF -
  CC204_RS06670 comGE 1389163..1389486 (-) 324 WP_088269462.1 competence type IV pilus minor pilin ComGE -
  CC204_RS06675 comGD 1389461..1389904 (-) 444 WP_088269463.1 competence type IV pilus minor pilin ComGD -
  CC204_RS06680 comYC 1389901..1390185 (-) 285 WP_088269464.1 competence type IV pilus major pilin ComGC Machinery gene
  CC204_RS06685 comGB 1390182..1391180 (-) 999 WP_227011239.1 competence type IV pilus assembly protein ComGB -
  CC204_RS06690 comGA 1391182..1392147 (-) 966 WP_088269466.1 competence type IV pilus ATPase ComGA -
  CC204_RS06695 - 1392823..1394151 (-) 1329 WP_088269467.1 APC family permease -
  CC204_RS06700 - 1394341..1395048 (-) 708 WP_088269468.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10900.94 Da        Isoelectric Point: 9.2577

>NTDB_id=234323 CC204_RS06680 WP_088269464.1 1389901..1390185(-) (comYC) [Enterococcus wangshanyuanii strain MN05]
MIKKKKQINYSGFTLLEMLVVLLIISVLILLFVPNLSKHKAGVDKKGNEAIVKIVETQIDLYVMEKNQTPTVEQLLKEEY
ITKEQYEKYQASEK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=234323 CC204_RS06680 WP_088269464.1 1389901..1390185(-) (comYC) [Enterococcus wangshanyuanii strain MN05]
ATGATCAAAAAAAAGAAGCAGATTAATTATAGTGGTTTTACGTTGTTAGAGATGTTAGTTGTTCTGTTGATTATTTCTGT
TTTGATTTTGCTATTTGTACCAAATCTTTCGAAACATAAAGCAGGTGTGGATAAAAAAGGCAACGAAGCAATCGTCAAAA
TCGTTGAAACTCAGATAGATCTCTATGTGATGGAAAAGAATCAGACGCCAACTGTCGAACAATTGTTAAAAGAGGAATAC
ATCACTAAAGAACAGTATGAAAAATATCAAGCGAGCGAGAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

49.462

98.936

0.489
  comGC/cglC Streptococcus pneumoniae Rx1

52.941

90.426

0.479
  comGC/cglC Streptococcus pneumoniae D39

52.941

90.426

0.479
  comGC/cglC Streptococcus pneumoniae R6

52.941

90.426

0.479
  comGC/cglC Streptococcus pneumoniae TIGR4

52.941

90.426

0.479
  comGC/cglC Streptococcus mitis NCTC 12261

51.765

90.426

0.468
  comYC Streptococcus mutans UA140

49.438

94.681

0.468
  comYC Streptococcus mutans UA159

49.438

94.681

0.468
  comYC Streptococcus gordonii str. Challis substr. CH1

47.253

96.809

0.457
  comGC/cglC Streptococcus mitis SK321

55.128

82.979

0.457
  comGC Lactococcus lactis subsp. cremoris KW2

53.165

84.043

0.447
  comGC Latilactobacillus sakei subsp. sakei 23K

41.86

91.489

0.383

Multiple sequence alignment