Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O23A_RS15565 Genome accession   NZ_CP021654
Coordinates   3421358..3422599 (+) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain O23A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416358..3427599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O23A_RS15540 (O23A_p3216) ampD 3416682..3417254 (-) 573 WP_087756643.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O23A_RS15545 (O23A_p3217) - 3417404..3417874 (+) 471 WP_198315355.1 TIGR02281 family clan AA aspartic protease -
  O23A_RS15550 (O23A_p3218) nadC 3417879..3418736 (+) 858 WP_087756645.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O23A_RS15555 (O23A_p3219) - 3419072..3419512 (+) 441 WP_087757417.1 pilin -
  O23A_RS15560 (O23A_p3220) pilB 3419519..3421225 (+) 1707 WP_087756646.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  O23A_RS15565 (O23A_p3221) pilC 3421358..3422599 (+) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  O23A_RS15570 (O23A_p3222) pilD 3422663..3423538 (+) 876 WP_087756647.1 prepilin peptidase Machinery gene
  O23A_RS15575 (O23A_p3223) coaE 3423558..3424172 (+) 615 WP_087756648.1 dephospho-CoA kinase -
  O23A_RS15580 (O23A_p3224) zapD 3424210..3424932 (+) 723 WP_021140336.1 cell division protein ZapD -
  O23A_RS15585 (O23A_p3225) yacG 3424942..3425136 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  O23A_RS15590 (O23A_p3226) mutT 3425214..3425621 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  O23A_RS15595 (O23A_p3227) - 3425630..3426814 (-) 1185 WP_087756650.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=232298 O23A_RS15565 WP_059113460.1 3421358..3422599(+) (pilC) [Aeromonas salmonicida strain O23A]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=232298 O23A_RS15565 WP_059113460.1 3421358..3422599(+) (pilC) [Aeromonas salmonicida strain O23A]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTACAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCACTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCTGGCGCCCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATATTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGAATTGGTGGTATGTGATTTTTGGCGGAATAGGG
CTTGGCATTTTCCTTTATGTACGAGCGTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTAGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGTACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment