Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCZ28_RS11420 Genome accession   NZ_CP021645
Coordinates   2566502..2567719 (-) Length   405 a.a.
NCBI ID   WP_140218113.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CS51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2561502..2572719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ28_RS11400 (CCZ28_11375) - 2564317..2564814 (+) 498 WP_140218107.1 hypothetical protein -
  CCZ28_RS11405 (CCZ28_11380) yacG 2564828..2565025 (-) 198 WP_058767413.1 DNA gyrase inhibitor YacG -
  CCZ28_RS11410 (CCZ28_11385) coaE 2565022..2565633 (-) 612 WP_140218109.1 dephospho-CoA kinase -
  CCZ28_RS11415 (CCZ28_11390) pilD 2565630..2566502 (-) 873 WP_140218111.1 A24 family peptidase Machinery gene
  CCZ28_RS11420 (CCZ28_11395) pilC 2566502..2567719 (-) 1218 WP_140218113.1 type II secretion system F family protein Machinery gene
  CCZ28_RS11425 (CCZ28_11400) pilB 2567928..2569622 (-) 1695 WP_140221328.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CCZ28_RS11430 (CCZ28_11405) - 2569835..2570371 (+) 537 WP_140218115.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CCZ28_RS24835 (CCZ28_11410) - 2570538..2571391 (+) 854 Protein_2254 IS5 family transposase -
  CCZ28_RS24695 - 2571568..2571810 (+) 243 Protein_2255 IS481 family transposase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44202.07 Da        Isoelectric Point: 9.8100

>NTDB_id=232198 CCZ28_RS11420 WP_140218113.1 2566502..2567719(-) (pilC) [Pseudomonas oryzihabitans strain CS51]
MADKAIKMGSFTWEGTDRKGTKVKGEMIGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPLDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKLVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVVVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLFVIGISEILQEWWLLVLGAMFVLGFVLR
HFYKKSEKFRDATDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKADVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=232198 CCZ28_RS11420 WP_140218113.1 2566502..2567719(-) (pilC) [Pseudomonas oryzihabitans strain CS51]
ATGGCCGATAAAGCAATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAGAT
GATCGGGTTGAATCCGGCGCTGATCAAGGCGCAGTTGCGCAAGCAGGGTATCAACCCGACTCGGGTACGCAAGAAGTCGG
TGTCGTTGTTCGGCAAGGGCAAGAAGATCAAGCCCCTGGATATCGCACTGTTCACCCGCCAGCTGGCGACCATGATGAGC
GCGGGCGTACCTCTGTTGCAGGCCTTCGATATCATTGGCGAGGGTTTCGACAATCCCAACATGCGCAAGCTGGTGGACGA
CATCAAGCAGGATGTCGCCGCGGGTAACAGCCTGGCCAACTCCCTGCGCAAACAACCCCAGTATTTCGATGATCTCTATT
GCAACCTAGTGGATGCCGGTGAGCAATCAGGTGCGCTGGAGACCCTGCTGGATCGTGTCGCGACCTACAAGGAAAAGACC
GAGGCGCTGAAGAAGAAGATCAAGAAGGCCATGACCTATCCGGCGGCTGTGGTGGTCGTCGCAGTGATCGTGTCGGCCAT
TTTGCTGATCAAGGTGGTGCCGCAATTCCAGTCGGTGTTCGAAGGCTTCGGTGCCCAGTTGCCGGCGTTCACGCTGTTCG
TGATCGGCATTTCCGAGATCCTGCAGGAGTGGTGGCTGCTGGTGCTTGGCGCCATGTTCGTGCTTGGCTTTGTATTGCGA
CATTTCTACAAGAAGTCGGAGAAATTCCGTGATGCCACGGACCGTGGCCTGCTGAAGATCCCGCTGATCGGCTCCATTCT
CTATAAGTCGGCCATTGCCCGTTATGCCCGTACCCTGGCTACCACCTTTGCCGCAGGTGTGCCTTTGGTAGACGCTCTGG
ATTCAGTCGCTGGTGCGACGGGTAACGTGGTCTTCCGCAATGCGGTGGAAAAGATCAAGGCTGATGTTTCCACGGGTATG
CAACTCAATTTCTCCATGCGCACCACTGGCGTGTTCTCCTCCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCGGG
TTCGCTGGACGAGATGCTGTCCAAGGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTGTTGGGGGTGTTGGTAGGTGGTCTGATCATCGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.012

100

0.79
  pilC Acinetobacter baylyi ADP1

59.902

100

0.605
  pilC Acinetobacter baumannii D1279779

59.406

99.753

0.593
  pilC Legionella pneumophila strain ERS1305867

55.639

98.519

0.548
  pilG Neisseria meningitidis 44/76-A

45.432

100

0.454
  pilG Neisseria gonorrhoeae MS11

45.185

100

0.452
  pilC Vibrio cholerae strain A1552

42.963

100

0.43
  pilC Vibrio campbellii strain DS40M4

40.389

100

0.41
  pilC Thermus thermophilus HB27

37.965

99.506

0.378

Multiple sequence alignment