Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PSPPH_RS04200 | Genome accession | NC_005773 |
| Coordinates | 979480..980697 (-) | Length | 405 a.a. |
| NCBI ID | WP_011167727.1 | Uniprot ID | Q48NC0 |
| Organism | Pseudomonas savastanoi pv. phaseolicola 1448A | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 974480..985697
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSPPH_RS04185 (PSPPH_0816) | yacG | 977780..977989 (-) | 210 | WP_007251656.1 | DNA gyrase inhibitor YacG | - |
| PSPPH_RS04190 (PSPPH_0817) | coaE | 977986..978609 (-) | 624 | WP_011167725.1 | dephospho-CoA kinase | - |
| PSPPH_RS04195 (PSPPH_0818) | pilD | 978606..979478 (-) | 873 | WP_011167726.1 | prepilin peptidase | Machinery gene |
| PSPPH_RS04200 (PSPPH_0819) | pilC | 979480..980697 (-) | 1218 | WP_011167727.1 | type II secretion system F family protein | Machinery gene |
| PSPPH_RS04205 (PSPPH_0820) | pilB | 980700..982394 (-) | 1695 | WP_011167728.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSPPH_RS27995 (PSPPH_0821) | - | 982619..983014 (+) | 396 | WP_011167729.1 | pilin | - |
| PSPPH_RS04215 (PSPPH_0822) | - | 983579..984838 (+) | 1260 | WP_004663377.1 | IS256-like element ISPsy17 family transposase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44043.98 Da Isoelectric Point: 10.0788
>NTDB_id=23209 PSPPH_RS04200 WP_011167727.1 979480..980697(-) (pilC) [Pseudomonas savastanoi pv. phaseolicola 1448A]
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFK
RAYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFK
RAYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=23209 PSPPH_RS04200 WP_011167727.1 979480..980697(-) (pilC) [Pseudomonas savastanoi pv. phaseolicola 1448A]
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAACTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCTG
TTTCGATATTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCTCGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCGGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACGGCTCTGCGACAGAAACCGGAATACTTCGATGACCTGTTTT
GTAATTTGGTCGATGCGGGCGAGCAAGCAGGTGCACTCGAGAGTCTCTTGGACCGCATCGCTAGCTACAAGGAAAAGACT
GAAAAGCTCAAAGCAAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTCGCAATTATCGTGTCAGGTAT
TTTGCTCATCAAAGTGGTGCCGCAGTTTCAGTCAGTTTTCGCAGGCTTTGGCGCAGAGCTACCCGCATTTACTCTCATGG
TAATCGGCTTATCAGATATCGTACAGAAATGGTGGTTAGCAATAGTTGGTCTTTTTTTCGTAGGCGCTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTGAAAAATTTCGCGATAATATTGATCGGTTTCTGCTGAAAGTACCGATCATTGGACCGCTTAT
TTTCAAGTCTTCCGTAGCTCGCTACGCGCGGACACTTGCAACAACATTCGCAGCAGGCGTTCCTCTAGTGGAGGCACTTG
ACTCAGTTGCAGGTGCTACCGGCAATGTTGTTTTCAGAGACGCTGTAAACAAGGTCAAACAAGACGTTTCCACAGGCATG
CAGTTGAATTTTTCGATGCGATCGACCGGTGTTTTTCCAAGCTTGGCAATCCAGATGACGGCCATAGGCGAGGAATCAGG
CGCGTTGGACAATATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACTTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAACTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCTG
TTTCGATATTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCTCGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCGGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACGGCTCTGCGACAGAAACCGGAATACTTCGATGACCTGTTTT
GTAATTTGGTCGATGCGGGCGAGCAAGCAGGTGCACTCGAGAGTCTCTTGGACCGCATCGCTAGCTACAAGGAAAAGACT
GAAAAGCTCAAAGCAAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTCGCAATTATCGTGTCAGGTAT
TTTGCTCATCAAAGTGGTGCCGCAGTTTCAGTCAGTTTTCGCAGGCTTTGGCGCAGAGCTACCCGCATTTACTCTCATGG
TAATCGGCTTATCAGATATCGTACAGAAATGGTGGTTAGCAATAGTTGGTCTTTTTTTCGTAGGCGCTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTGAAAAATTTCGCGATAATATTGATCGGTTTCTGCTGAAAGTACCGATCATTGGACCGCTTAT
TTTCAAGTCTTCCGTAGCTCGCTACGCGCGGACACTTGCAACAACATTCGCAGCAGGCGTTCCTCTAGTGGAGGCACTTG
ACTCAGTTGCAGGTGCTACCGGCAATGTTGTTTTCAGAGACGCTGTAAACAAGGTCAAACAAGACGTTTCCACAGGCATG
CAGTTGAATTTTTCGATGCGATCGACCGGTGTTTTTCCAAGCTTGGCAATCCAGATGACGGCCATAGGCGAGGAATCAGG
CGCGTTGGACAATATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACTTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
74.568 |
100 |
0.746 |
| pilC | Acinetobacter baylyi ADP1 |
59.512 |
100 |
0.602 |
| pilC | Acinetobacter baumannii D1279779 |
58.911 |
99.753 |
0.588 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.778 |
97.778 |
0.516 |
| pilG | Neisseria gonorrhoeae MS11 |
43.672 |
99.506 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
43.672 |
99.506 |
0.435 |
| pilC | Vibrio campbellii strain DS40M4 |
42.015 |
100 |
0.422 |
| pilC | Vibrio cholerae strain A1552 |
41.728 |
100 |
0.417 |
| pilC | Thermus thermophilus HB27 |
38.557 |
99.259 |
0.383 |