Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   CCD85_RS08620 Genome accession   NZ_CP021519
Coordinates   1534600..1535832 (+) Length   410 a.a.
NCBI ID   WP_002216405.1    Uniprot ID   Q7DDR1
Organism   Neisseria meningitidis strain 11-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529600..1540832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD85_RS08600 (CCD85_08750) fabI 1530519..1531304 (-) 786 WP_002228978.1 enoyl-ACP reductase FabI -
  CCD85_RS08605 (CCD85_08755) dapD 1531459..1532280 (-) 822 WP_002228980.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  CCD85_RS08615 (CCD85_08765) pgi 1532447..1534090 (-) 1644 WP_002228985.1 glucose-6-phosphate isomerase -
  CCD85_RS08620 (CCD85_08770) pilG 1534600..1535832 (+) 1233 WP_002216405.1 type 4 pilus assembly protein PilG Machinery gene
  CCD85_RS08625 (CCD85_08775) pilD 1535906..1536766 (+) 861 WP_002216403.1 A24 family peptidase Machinery gene
  CCD85_RS08630 (CCD85_08780) coaE 1536768..1537400 (+) 633 WP_002226983.1 dephospho-CoA kinase -
  CCD85_RS08635 (CCD85_08785) - 1537393..1537602 (+) 210 WP_002226982.1 DNA gyrase inhibitor YacG -
  CCD85_RS08640 (CCD85_08790) pilF 1537687..1539363 (-) 1677 WP_002228974.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CCD85_RS08660 (CCD85_08800) - 1539853..1540299 (-) 447 WP_002220271.1 DUF441 domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45273.29 Da        Isoelectric Point: 9.9273

>NTDB_id=231648 CCD85_RS08620 WP_002216405.1 1534600..1535832(+) (pilG) [Neisseria meningitidis strain 11-14]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=231648 CCD85_RS08620 WP_002216405.1 1534600..1535832(+) (pilG) [Neisseria meningitidis strain 11-14]
ATGGCTAAAAACGGAGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCCGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCGCGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATCACCGTTTTCACCCGCCAGCTGTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCGAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAACCACCCAAAATATTTCG
ACCGCTTCTACTGCAATCTGGTTGCGGCGGGCGAAACGGGCGGCGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAAGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCACTGACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCGCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTGGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCATACTGCTGCGTATGCCGATTTT
CGGAGACATTGTCCGCAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCGACGCTGATTGCGGCAGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGTTTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGTTGCAGATGTCTTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTACGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATCATTATCGTGATTTTAGGCTTGGTCATCGGCACGCTTCTGGTCGCCATGTATCTG
CCGCTGTTTAATTTGGGCAACGTGGTCGCCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(281-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7DDR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

99.268

100

0.993
  pilG Neisseria meningitidis 44/76-A

98.537

100

0.985
  pilC Acinetobacter baumannii D1279779

47.487

97.073

0.461
  pilC Acinetobacter baylyi ADP1

45.614

97.317

0.444
  pilC Pseudomonas stutzeri DSM 10701

44.913

98.293

0.441
  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434
  pilC Vibrio cholerae strain A1552

41.045

98.049

0.402
  pilC Vibrio campbellii strain DS40M4

39.163

99.024

0.388

Multiple sequence alignment