Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C1N79_RS12275 Genome accession   NZ_CP027297
Coordinates   2720363..2722291 (+) Length   642 a.a.
NCBI ID   WP_127439740.1    Uniprot ID   -
Organism   Streptomyces sp. SGAir0924     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715363..2727291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS35900 - 2715898..2716041 (+) 144 WP_019326342.1 hypothetical protein -
  C1N79_RS35905 (C1N79_12260) - 2716657..2716956 (+) 300 WP_019326343.1 YtxH domain-containing protein -
  C1N79_RS12265 (C1N79_12265) - 2717035..2718489 (+) 1455 WP_029393529.1 FGGY-family carbohydrate kinase -
  C1N79_RS12270 (C1N79_12270) rcrP 2718630..2720363 (+) 1734 WP_019326345.1 ABC transporter ATP-binding protein Regulator
  C1N79_RS12275 (C1N79_12275) rcrQ 2720363..2722291 (+) 1929 WP_127439740.1 ABC transporter ATP-binding protein Regulator
  C1N79_RS12280 (C1N79_12280) - 2722380..2722613 (+) 234 WP_137960952.1 hypothetical protein -
  C1N79_RS12285 (C1N79_12285) - 2722631..2724013 (-) 1383 Protein_2399 RNA polymerase sigma factor -
  C1N79_RS12290 (C1N79_12290) dnaG 2724108..2726039 (-) 1932 WP_137960953.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69460.57 Da        Isoelectric Point: 5.2126

>NTDB_id=231650 C1N79_RS12275 WP_127439740.1 2720363..2722291(+) (rcrQ) [Streptomyces sp. SGAir0924]
MAGPAGRMMAGGGPDQRSMDFKGSGKRLMSRFRPERTTLFTLVACVVVSVALSVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLESMRERGDGQVADMLRSTDFTPGQGIDFGAVGEVLLLALAVFGAAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDQRQRGEVLSRATNDIDNVQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGALNAHIEEMYTGHALVKVFGRQEESARQFAEQNEALYEAGFKAQFNSGIMQPLMVFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQSADPIPGARPEDLRGRVELE
NVSFRYDPEKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRSGVGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHSELLAADGGYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=231650 C1N79_RS12275 WP_127439740.1 2720363..2722291(+) (rcrQ) [Streptomyces sp. SGAir0924]
ATGGCGGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGTCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGGGCAAGCG
GCTGATGTCCCGGTTCCGGCCGGAGCGGACGACCCTGTTCACGCTGGTGGCGTGCGTCGTCGTCAGCGTCGCCCTCAGCG
TGGTGGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGCGCC
ACGAAGGAGCAGGTCCTGGAGTCGATGCGGGAACGCGGTGACGGCCAGGTCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCGGGGCAGGGCATCGACTTCGGCGCGGTGGGTGAGGTGCTGCTGCTGGCGCTGGCGGTGTTCGGCGCGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCGGTGAACCGCACGATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACCAGCGGCAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAA
CGTCCAGCAGACGCTCCAGCAGTCCATGGGCCAGTTGATCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTGGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTCCAGCAGTGGCGCTCGACCGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGGTGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTCGTCGGCGGCCTGCGGGTGGCCTCGGGCTCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCGGGCGTGGCCTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGTCCGCGGACCCGATCCCGGGGGCGCGGCCGGAGGACCTGCGCGGGCGGGTGGAGCTGGAG
AACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGAACCTGTCGCTGACGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGCCCCACGGGCGCCGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGA
TCACCCTGGACGGCGTGGACATCGCCAAGATGTCCCGGGACGAGCTGCGCTCCGGCGTGGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGGACGCTGCCCGACGGTTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAAGCGATGGCCAAGCTGGCGCACGGGCGGACGTCCTT
CGTCATCGCGCACCGGTTGTCGACGATCCGCGACGCGGACGTGATCTTGGTGATGGAGAATGGGTCCATCGTCGAGCAGG
GAACGCACAGCGAGCTGCTGGCGGCCGACGGCGGGTACGCCCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.262

96.262

0.397

Multiple sequence alignment