Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C1N79_RS12270 Genome accession   NZ_CP027297
Coordinates   2718630..2720363 (+) Length   577 a.a.
NCBI ID   WP_019326345.1    Uniprot ID   A0ABW1XV93
Organism   Streptomyces sp. SGAir0924     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713630..2725363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS12240 (C1N79_12240) - 2715145..2715819 (+) 675 WP_175437981.1 ANTAR domain-containing protein -
  C1N79_RS35900 - 2715898..2716041 (+) 144 WP_019326342.1 hypothetical protein -
  C1N79_RS35905 (C1N79_12260) - 2716657..2716956 (+) 300 WP_019326343.1 YtxH domain-containing protein -
  C1N79_RS12265 (C1N79_12265) - 2717035..2718489 (+) 1455 WP_029393529.1 FGGY-family carbohydrate kinase -
  C1N79_RS12270 (C1N79_12270) rcrP 2718630..2720363 (+) 1734 WP_019326345.1 ABC transporter ATP-binding protein Regulator
  C1N79_RS12275 (C1N79_12275) rcrQ 2720363..2722291 (+) 1929 WP_127439740.1 ABC transporter ATP-binding protein Regulator
  C1N79_RS12280 (C1N79_12280) - 2722380..2722613 (+) 234 WP_137960952.1 hypothetical protein -
  C1N79_RS12285 (C1N79_12285) - 2722631..2724013 (-) 1383 Protein_2399 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62575.73 Da        Isoelectric Point: 5.7908

>NTDB_id=231649 C1N79_RS12270 WP_019326345.1 2718630..2720363(+) (rcrP) [Streptomyces sp. SGAir0924]
MLIRLLRAYLRPYRKPIALLVALQFVQTCASLYLPTLNADIIDNGVVMGDTGYILGYGALMIAISLVQVVGNVGAVYFGA
RTAAALGRDLRAAVFDRVQSFSAREVGGFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVGVVPVLAICVTLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLGTRSSVVP
PEAPVTELRRHGHLELRGAGFRYPGAEEPVLRNVELVARPGETTAVIGSTGSGKSTLLSLVPRLVDATEGEVLVDGVDVR
TLDPKVLARVVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAREFVSALEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=231649 C1N79_RS12270 WP_019326345.1 2718630..2720363(+) (rcrP) [Streptomyces sp. SGAir0924]
GTGCTCATACGACTCCTGCGGGCCTACCTCAGGCCCTACCGGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCGTGCA
GACCTGCGCCAGCCTCTACCTGCCGACGCTGAACGCGGACATCATCGACAACGGTGTCGTCATGGGCGACACCGGCTACA
TCCTGGGCTACGGCGCCCTCATGATCGCCATCTCGCTGGTGCAGGTGGTGGGCAACGTCGGCGCCGTCTACTTCGGTGCC
CGCACCGCCGCCGCGCTCGGCCGGGACCTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGTGAGGTCGG
CGGCTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTCTCCGGGGTG
CTGGTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGCAGGCTGCGCCCGCTGTTCCGGGCGATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACGCCGACCTGACCGAGGTGTCCCTCGGCACCGGCAATCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGGGACCCGGAGCAGTGTCGTCCCG
CCGGAGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGCTGCGGGGCGCCGGTTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTCAGGAACGTGGAGCTGGTGGCCCGGCCGGGCGAGACCACGGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTGAGCCTGGTCCCCCGGCTGGTCGACGCCACCGAGGGCGAGGTGCTGGTCGACGGGGTGGACGTACGG
ACCCTCGATCCGAAGGTGCTGGCCCGGGTGGTGGGGCTGGTGCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGAGTTCG
TCTCCGCGCTGGAGGGCGGGCTGGACGCGCCGATCTCGCAGGGCGGCACCAATGTGTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGCACCCTGGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCCGAGCTGGGGCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCATCGTGCTGGACGAGGGCCGGGTGGTCGGCGTCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40

97.054

0.388

Multiple sequence alignment