Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJE04_RS13225 Genome accession   NC_005139
Coordinates   2835841..2837067 (+) Length   408 a.a.
NCBI ID   WP_011151130.1    Uniprot ID   Q7MHT7
Organism   Vibrio vulnificus YJ016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2830841..2842067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS13205 (VV2776) ampD 2831834..2832406 (-) 573 WP_011151126.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BJE04_RS13210 (VV2777) nadC 2832499..2833386 (+) 888 WP_043877312.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BJE04_RS13215 (VV2778) - 2833606..2834088 (+) 483 WP_011151128.1 pilin -
  BJE04_RS13220 (VV2779) pilB 2834105..2835793 (+) 1689 WP_011151129.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJE04_RS13225 (VV2780) pilC 2835841..2837067 (+) 1227 WP_011151130.1 type II secretion system F family protein Machinery gene
  BJE04_RS13230 (VV2781) pilD 2837161..2838030 (+) 870 WP_043877313.1 prepilin peptidase Machinery gene
  BJE04_RS13235 (VV2782) coaE 2838032..2838640 (+) 609 WP_011151132.1 dephospho-CoA kinase -
  BJE04_RS13240 (VV2783) zapD 2838673..2839413 (+) 741 WP_011079546.1 cell division protein ZapD -
  BJE04_RS13245 (VV2784) yacG 2839476..2839670 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  BJE04_RS13250 (VV2785) rplS 2839943..2840296 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  BJE04_RS13255 (VV2786) trmD 2840338..2841087 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BJE04_RS13260 (VV2787) rimM 2841115..2841663 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  BJE04_RS13265 (VV2788) rpsP 2841679..2841927 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45269.53 Da        Isoelectric Point: 10.3244

>NTDB_id=23141 BJE04_RS13225 WP_011151130.1 2835841..2837067(+) (pilC) [Vibrio vulnificus YJ016]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLSTM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=23141 BJE04_RS13225 WP_011151130.1 2835841..2837067(+) (pilC) [Vibrio vulnificus YJ016]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCTCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGAGAA
AAAAATGAGCAGTTGCGAGCAAAAGTAATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATTCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilC Pseudomonas stutzeri DSM 10701

41.089

99.02

0.407
  pilG Neisseria meningitidis 44/76-A

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

39.512

100

0.397
  pilC Acinetobacter baylyi ADP1

40.351

97.794

0.395
  pilC Legionella pneumophila strain ERS1305867

39.851

99.02

0.395

Multiple sequence alignment