Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCK83_RS08095 Genome accession   NZ_CP021428
Coordinates   1681560..1682786 (-) Length   408 a.a.
NCBI ID   WP_005079343.1    Uniprot ID   A0A009R5F8
Organism   Acinetobacter pittii strain HUMV-6483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1676560..1687786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS08065 - 1676590..1677900 (+) 1311 WP_087400409.1 tetratricopeptide repeat protein -
  CCK83_RS08070 - 1677977..1678303 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  CCK83_RS08075 rlmB 1678406..1679155 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CCK83_RS08080 - 1679191..1680105 (+) 915 WP_032038060.1 DMT family transporter -
  CCK83_RS08085 coaE 1680102..1680698 (-) 597 WP_032012473.1 dephospho-CoA kinase -
  CCK83_RS08090 pilD 1680700..1681560 (-) 861 WP_032038058.1 prepilin peptidase Machinery gene
  CCK83_RS08095 pilC 1681560..1682786 (-) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  CCK83_RS08100 pilB 1682813..1684525 (-) 1713 WP_032052992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CCK83_RS08105 tpiA 1684817..1685611 (+) 795 WP_017481951.1 triose-phosphate isomerase -
  CCK83_RS08110 secG 1685624..1685953 (+) 330 WP_087400411.1 preprotein translocase subunit SecG -
  CCK83_RS08130 rimP 1686591..1687115 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=230677 CCK83_RS08095 WP_005079343.1 1681560..1682786(-) (pilC) [Acinetobacter pittii strain HUMV-6483]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=230677 CCK83_RS08095 WP_005079343.1 1681560..1682786(-) (pilC) [Acinetobacter pittii strain HUMV-6483]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCAATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R5F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment