Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CBP36_RS15475 Genome accession   NZ_CP021366
Coordinates   3336868..3338088 (+) Length   406 a.a.
NCBI ID   WP_086913249.1    Uniprot ID   A0A240UG67
Organism   Acidovorax carolinensis strain P4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3331868..3343088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP36_RS15465 (CBP36_15455) - 3333396..3334286 (-) 891 WP_204247568.1 hypothetical protein -
  CBP36_RS15470 (CBP36_15460) pilB 3335111..3336847 (+) 1737 WP_086928036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CBP36_RS15475 (CBP36_15465) pilC 3336868..3338088 (+) 1221 WP_086913249.1 type II secretion system F family protein Machinery gene
  CBP36_RS15480 (CBP36_15470) - 3338088..3338966 (+) 879 WP_086928037.1 prepilin peptidase -
  CBP36_RS15485 (CBP36_15475) coaE 3338969..3339577 (+) 609 WP_086928038.1 dephospho-CoA kinase -
  CBP36_RS15490 (CBP36_15480) zapD 3339663..3340418 (+) 756 WP_086928039.1 cell division protein ZapD -
  CBP36_RS15495 (CBP36_15485) - 3340432..3340650 (+) 219 WP_086928040.1 DNA gyrase inhibitor YacG -
  CBP36_RS15500 (CBP36_15490) - 3340741..3341160 (-) 420 WP_269466978.1 NUDIX domain-containing protein -
  CBP36_RS15505 (CBP36_15495) - 3341153..3342025 (-) 873 WP_086928041.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44721.70 Da        Isoelectric Point: 9.3853

>NTDB_id=230214 CBP36_RS15475 WP_086913249.1 3336868..3338088(+) (pilC) [Acidovorax carolinensis strain P4]
MATAASNRDIKDFVFEWEGKDRNGKIVRGETRAVGENQVQAMLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGNTNASVTKLLNDVRSDVETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEK
TEAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEIFVKWWWLIFGVLGGGFYFF
MQAWRRNEKVQMFMDRLMLRMPIFGALVEKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYSMATDKIQQEVSTG
TSLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=230214 CBP36_RS15475 WP_086913249.1 3336868..3338088(+) (pilC) [Acidovorax carolinensis strain P4]
ATGGCAACCGCAGCATCCAATCGTGATATCAAGGATTTCGTCTTTGAGTGGGAAGGCAAAGACCGCAACGGAAAGATTGT
CCGGGGGGAAACTCGTGCCGTCGGCGAAAATCAGGTGCAGGCCATGTTGCGGCGCCAAGGGGTTTTTCCCACCAAGATCA
AGAAGCGCCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGATATCGCCCTGTTCACCCGTCAGCTGGCTACCATGATG
AAGGCTGGGGTGCCGCTGCTGCAGGCGTTCGACATTGTGGGACGCGGCAATACCAATGCCAGCGTGACCAAATTGCTGAA
CGACGTGCGGTCGGATGTCGAGACCGGTACTTCGCTCAATGGCGCATTTCGCAAGTACCCCATGTATTTCGACAGCCTGT
ACTGCAATCTGGTCGAGGCGGGGGAAGCGGCGGGTATTCTGGAAGCGCTTCTTGATCGCCTGGCGCTTTACATGGAAAAG
ACCGAGGCCATCAAGTCCAAGATCAAATCGGCACTCATGTACCCGATTTCCGTGGTGATCGTGGCGTTTGTGGTGGTTAC
CGTGATCATGATTTTTGTGATTCCGGCCTTCAAGGAAGTTTTCACCTCGTTTGGTGCGGATTTGCCCGCCCCCACCCTTT
TCGTCATGGCCATCAGCGAAATATTCGTGAAGTGGTGGTGGTTGATTTTCGGTGTGCTGGGTGGCGGGTTTTACTTCTTC
ATGCAGGCCTGGCGTCGCAATGAAAAAGTCCAGATGTTCATGGACCGCCTGATGCTGCGCATGCCCATTTTTGGCGCGCT
GGTGGAAAAGTCCTGCGTCGCCCGCTGGACCCGCACGCTCTCGACCATGTTTGCCGCCGGCGTGCCCTTGGTGGAGGCAC
TGGACTCCGTGGGGGGCGCCGCAGGCAATTCTGTCTATTCCATGGCGACCGACAAGATTCAGCAAGAGGTTTCCACCGGA
ACCAGCCTGACTGCGGCAATGGGCAATGCCAATATTTTTCCCTCCATGGTGCTGCAGATGTGCGCCATTGGAGAGGAGTC
GGGTTCCATCGACCACATGCTGGGCAAGGCAGCCGATTTCTACGAAGCCGAAGTGGACGACATGGTTGCCGGGCTGTCGA
GCCTGATGGAGCCCATCATCATTGTATTTTTGGGCACCCTCATTGGTGGCATCGTGGTGTCGATGTACCTGCCGATTTTC
AAGCTCGGTCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240UG67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.507

0.539
  pilG Neisseria gonorrhoeae MS11

52.273

97.537

0.51
  pilG Neisseria meningitidis 44/76-A

52.02

97.537

0.507
  pilC Acinetobacter baylyi ADP1

49.749

98.03

0.488
  pilC Legionella pneumophila strain ERS1305867

49.246

98.03

0.483
  pilC Acinetobacter baumannii D1279779

47.607

97.783

0.466
  pilC Vibrio cholerae strain A1552

40.554

97.783

0.397
  pilC Vibrio campbellii strain DS40M4

38.75

98.522

0.382
  pilC Thermus thermophilus HB27

37.469

99.261

0.372

Multiple sequence alignment