Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CBP33_RS15045 Genome accession   NZ_CP021359
Coordinates   3214720..3215940 (+) Length   406 a.a.
NCBI ID   WP_086913249.1    Uniprot ID   A0A240UG67
Organism   Acidovorax carolinensis strain NA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209720..3220940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP33_RS15015 (CBP33_15005) cgtA 3209733..3210803 (-) 1071 WP_086913247.1 Obg family GTPase CgtA -
  CBP33_RS15020 (CBP33_15010) rpmA 3210971..3211228 (-) 258 WP_008905145.1 50S ribosomal protein L27 -
  CBP33_RS15025 (CBP33_15015) rplU 3211244..3211555 (-) 312 WP_024814187.1 50S ribosomal protein L21 -
  CBP33_RS15030 (CBP33_15020) - 3211786..3212715 (+) 930 WP_086914179.1 polyprenyl synthetase family protein -
  CBP33_RS15040 (CBP33_15030) pilB 3212963..3214699 (+) 1737 WP_086913248.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CBP33_RS15045 (CBP33_15035) pilC 3214720..3215940 (+) 1221 WP_086913249.1 type II secretion system F family protein Machinery gene
  CBP33_RS15050 (CBP33_15040) - 3215940..3216818 (+) 879 WP_086913250.1 prepilin peptidase -
  CBP33_RS15055 (CBP33_15045) coaE 3216821..3217429 (+) 609 WP_086913251.1 dephospho-CoA kinase -
  CBP33_RS15060 (CBP33_15050) zapD 3217515..3218270 (+) 756 WP_086913252.1 cell division protein ZapD -
  CBP33_RS15065 (CBP33_15055) - 3218284..3218502 (+) 219 WP_086913253.1 DNA gyrase inhibitor YacG -
  CBP33_RS15070 (CBP33_15060) - 3218594..3219013 (-) 420 WP_086913254.1 NUDIX domain-containing protein -
  CBP33_RS15075 (CBP33_15065) - 3219006..3219878 (-) 873 WP_086913255.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44721.70 Da        Isoelectric Point: 9.3853

>NTDB_id=230163 CBP33_RS15045 WP_086913249.1 3214720..3215940(+) (pilC) [Acidovorax carolinensis strain NA2]
MATAASNRDIKDFVFEWEGKDRNGKIVRGETRAVGENQVQAMLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGNTNASVTKLLNDVRSDVETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEK
TEAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEIFVKWWWLIFGVLGGGFYFF
MQAWRRNEKVQMFMDRLMLRMPIFGALVEKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYSMATDKIQQEVSTG
TSLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=230163 CBP33_RS15045 WP_086913249.1 3214720..3215940(+) (pilC) [Acidovorax carolinensis strain NA2]
ATGGCAACCGCAGCATCCAATCGTGATATCAAGGATTTCGTCTTTGAGTGGGAAGGCAAAGACCGCAACGGAAAGATTGT
CCGGGGGGAAACCCGTGCCGTCGGCGAAAATCAGGTGCAGGCCATGTTGCGGCGCCAAGGGGTTTTTCCCACCAAGATCA
AGAAGCGCCGCATGCGCTCAGGCAAGAAGATCAAGCCCAAGGATATCGCCCTGTTCACCCGTCAGCTGGCTACCATGATG
AAGGCTGGGGTGCCGCTGCTGCAGGCATTCGACATTGTGGGACGCGGCAATACCAATGCCAGCGTGACCAAATTGCTGAA
CGACGTGCGGTCGGATGTCGAGACCGGTACTTCGCTCAATGGCGCATTTCGCAAGTACCCCATGTATTTCGACAGCCTGT
ACTGCAATCTGGTCGAGGCGGGGGAAGCTGCGGGTATTCTGGAAGCGCTTCTTGATCGCCTGGCGCTTTACATGGAAAAG
ACCGAGGCCATCAAGTCCAAGATCAAGTCGGCACTCATGTACCCGATTTCCGTGGTGATCGTGGCGTTTGTGGTGGTTAC
CGTGATCATGATTTTTGTGATTCCGGCCTTCAAGGAAGTTTTCACGTCGTTTGGTGCGGATTTGCCCGCCCCCACCCTTT
TCGTCATGGCCATCAGCGAAATATTCGTGAAGTGGTGGTGGTTGATTTTCGGTGTGCTGGGTGGCGGATTTTACTTCTTC
ATGCAGGCCTGGCGTCGCAATGAAAAAGTCCAGATGTTCATGGACCGCCTGATGCTGCGCATGCCCATTTTTGGCGCGCT
GGTGGAAAAGTCCTGCGTCGCCCGCTGGACCCGCACGCTCTCGACCATGTTTGCCGCCGGCGTGCCCTTGGTGGAGGCAC
TGGACTCCGTGGGGGGCGCCGCAGGCAATTCTGTCTATTCCATGGCGACCGACAAGATTCAGCAAGAGGTTTCCACCGGA
ACCAGCCTGACTGCGGCAATGGGCAACGCCAATATTTTTCCCTCTATGGTGCTGCAGATGTGCGCCATTGGAGAGGAGTC
GGGTTCCATCGACCACATGCTGGGCAAGGCAGCCGATTTCTACGAAGCCGAAGTGGACGACATGGTTGCCGGGCTGTCGA
GCCTGATGGAGCCCATCATCATTGTATTTTTGGGCACCCTCATTGGTGGCATCGTGGTGTCGATGTACCTGCCGATTTTC
AAGCTCGGTCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240UG67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.507

0.539
  pilG Neisseria gonorrhoeae MS11

52.273

97.537

0.51
  pilG Neisseria meningitidis 44/76-A

52.02

97.537

0.507
  pilC Acinetobacter baylyi ADP1

49.749

98.03

0.488
  pilC Legionella pneumophila strain ERS1305867

49.246

98.03

0.483
  pilC Acinetobacter baumannii D1279779

47.607

97.783

0.466
  pilC Vibrio cholerae strain A1552

40.554

97.783

0.397
  pilC Vibrio campbellii strain DS40M4

38.75

98.522

0.382
  pilC Thermus thermophilus HB27

37.469

99.261

0.372

Multiple sequence alignment