Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTMN5_RS14365 Genome accession   NZ_CP021333
Coordinates   3124260..3125480 (-) Length   406 a.a.
NCBI ID   WP_126812063.1    Uniprot ID   -
Organism   Marinobacter salarius strain HL2708#2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3119260..3130480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTMN5_RS14340 (MTMN5_02900) yacG 3119342..3119530 (-) 189 WP_036209919.1 DNA gyrase inhibitor YacG -
  MTMN5_RS14345 (MTMN5_02901) - 3119551..3121911 (-) 2361 WP_227544155.1 response regulator -
  MTMN5_RS14350 (MTMN5_02902) tsaA 3121944..3122690 (-) 747 WP_126812057.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MTMN5_RS14355 (MTMN5_02903) coaE 3122696..3123298 (-) 603 WP_126812059.1 dephospho-CoA kinase -
  MTMN5_RS14360 (MTMN5_02904) pilD 3123299..3124174 (-) 876 WP_126812061.1 A24 family peptidase Machinery gene
  MTMN5_RS14365 (MTMN5_02905) pilC 3124260..3125480 (-) 1221 WP_126812063.1 type II secretion system F family protein Machinery gene
  MTMN5_RS14370 (MTMN5_02906) pilB 3125483..3127198 (-) 1716 WP_126812065.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTMN5_RS14375 (MTMN5_02907) - 3127263..3127505 (+) 243 WP_126812067.1 hypothetical protein -
  MTMN5_RS14380 (MTMN5_02908) - 3127597..3128082 (+) 486 WP_164732152.1 pilin -
  MTMN5_RS14385 (MTMN5_02909) - 3128205..3129722 (+) 1518 WP_126812071.1 O-antigen ligase -
  MTMN5_RS14390 (MTMN5_02910) - 3129782..3130225 (+) 444 WP_126812073.1 pilin -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44381.27 Da        Isoelectric Point: 9.6081

>NTDB_id=229977 MTMN5_RS14365 WP_126812063.1 3124260..3125480(-) (pilC) [Marinobacter salarius strain HL2708#2]
MAEKAEKLQAFVWEGKDRKGNKTKGEVSGTNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVTNIRNDISSGTSFAGALKKYPRHFDDLYCNLVDSGEKAGALESMLDRIATYLEKT
EILKKKVKKAMTYPAAIVVVAIIVTAILLVKVVPQFESLFKGFGADLPVFTQMVVRLSEWLQTWWFVVLLGIVGTIFLFK
EAIRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIQRIKNDVSSGT
QLQATMRQQDVFPVMAVQLTAIGEESGNLDEMLEKVAVHYEAVVDDMVDNLTALLEPIIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=229977 MTMN5_RS14365 WP_126812063.1 3124260..3125480(-) (pilC) [Marinobacter salarius strain HL2708#2]
ATGGCAGAGAAAGCAGAGAAACTTCAGGCGTTCGTCTGGGAAGGCAAGGACCGCAAGGGCAACAAAACCAAGGGCGAGGT
GTCTGGCACCAACCTGGCTCTGGTGAAGGCCCAGTTGCGTAAGCAGGGCATTATTCCAGACAAGGTGAAGAAGAAACCAA
AGCCCCTGTTTGGCGGCAGCAAAAAGATCACGCCTTTCGACATCGCCATGCTTACCCGCCAGCTCGCCACCATGATGAAG
GCTGGCGTGCCACTGGTTCAGAGTTTCGATATTGTGGCTGACGGCCTTGAGAACAGGGGCCTTCAGGAGTTGGTTACCAA
CATCCGTAACGATATTTCTTCGGGTACGAGCTTTGCAGGCGCACTGAAAAAGTACCCCAGGCACTTTGATGATCTGTACT
GCAACCTCGTGGACTCTGGCGAAAAGGCGGGCGCTCTGGAGAGCATGCTGGATCGCATCGCGACCTATCTTGAGAAAACG
GAGATCCTCAAGAAGAAAGTTAAAAAAGCCATGACCTACCCAGCCGCTATCGTCGTCGTTGCTATCATTGTGACGGCCAT
CCTGCTGGTTAAAGTGGTACCCCAGTTCGAAAGCCTGTTTAAGGGCTTTGGTGCGGACCTGCCAGTATTTACGCAGATGG
TGGTCCGGTTGTCGGAATGGCTTCAGACTTGGTGGTTTGTGGTTTTACTCGGCATTGTCGGAACTATCTTTCTGTTCAAG
GAAGCTATTCGACGATCTCAGAAATTCTCGGATCTCGTCGATAAATATGTGCTGAAACTGCCTGTCGTGGGCGAAATCCT
GGATAAGTCGGCCGTTGCCAAGTTTGGGCGCGTACTTTCCACGACCTTTGCGGCTGGTGTTCCGCTCGTTGATGCGCTCG
ACTCCGTTGCCGGCGCGACCGGCAACGCCGTTTATCGAGATGCTATCCAGCGAATAAAAAACGATGTTTCGAGCGGTACC
CAATTACAGGCCACCATGCGCCAACAGGATGTGTTCCCGGTTATGGCCGTGCAATTGACCGCCATTGGTGAAGAATCCGG
TAACCTGGATGAAATGCTGGAGAAAGTCGCCGTCCATTACGAAGCGGTGGTGGATGACATGGTCGACAACCTCACAGCCC
TGCTGGAGCCGATCATCATGGCGGTACTGGGCGTACTCGTAGGCGGCTTGATCATCGCTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

99.754

0.663
  pilC Acinetobacter baumannii D1279779

57.778

99.754

0.576
  pilC Acinetobacter baylyi ADP1

57.635

100

0.576
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.222

99.754

0.421
  pilG Neisseria meningitidis 44/76-A

41.872

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.406
  pilC Vibrio cholerae strain A1552

40.5

98.522

0.399

Multiple sequence alignment