Detailed information NTG0229976

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MTMN5_RS14360
• Genome accession: NZ_CP021333
• Coordinates: 3123299..3124174 (-)
• Length: 291 a.a.
• NCBI ID: WP_126812061.1
• Uniprot ID: -
• Organism: Marinobacter salarius strain HL2708#2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3118299..3129174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTMN5_RS14335 (MTMN5_02899)	-	3118686..3119240 (-)	555	WP_036209917.1	YfaZ family outer membrane protein	-
MTMN5_RS14340 (MTMN5_02900)	yacG	3119342..3119530 (-)	189	WP_036209919.1	DNA gyrase inhibitor YacG	-
MTMN5_RS14345 (MTMN5_02901)	-	3119551..3121911 (-)	2361	WP_227544155.1	response regulator	-
MTMN5_RS14350 (MTMN5_02902)	tsaA	3121944..3122690 (-)	747	WP_126812057.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MTMN5_RS14355 (MTMN5_02903)	coaE	3122696..3123298 (-)	603	WP_126812059.1	dephospho-CoA kinase	-
MTMN5_RS14360 (MTMN5_02904)	pilD	3123299..3124174 (-)	876	WP_126812061.1	A24 family peptidase	Machinery gene
MTMN5_RS14365 (MTMN5_02905)	pilC	3124260..3125480 (-)	1221	WP_126812063.1	type II secretion system F family protein	Machinery gene
MTMN5_RS14370 (MTMN5_02906)	pilB	3125483..3127198 (-)	1716	WP_126812065.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MTMN5_RS14375 (MTMN5_02907)	-	3127263..3127505 (+)	243	WP_126812067.1	hypothetical protein	-
MTMN5_RS14380 (MTMN5_02908)	-	3127597..3128082 (+)	486	WP_164732152.1	pilin	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32128.10 Da
• Isoelectric Point: 4.8090

>NTDB_id=229976 MTMN5_RS14360 WP_126812061.1 3123299..3124174(-) (pilD) [Marinobacter salarius strain HL2708#2]
MISLDTFLATPWLLYTAVIFFSLCIGSFLNVVILRLPKMMQQDWRCQCEEFLELSDDQRKNDEPITLSKPASTCPSCGHS
IRAWENVPVISYLVLGGKCASCKAGISPRYPMIEAITALFSVVTILVMGPSEAALWSLLLVWVLIALTVIDFDTQLLPDS
MTLPLMWLGLILNYFDVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWELLPAVILLSSL
VGAVVGISLMVFRKHGREVPIPFGPYLAAAGLLCLWFGAEIQAAWYAYLGV

Nucleotide

• Length: 876 bp

>NTDB_id=229976 MTMN5_RS14360 WP_126812061.1 3123299..3124174(-) (pilD) [Marinobacter salarius strain HL2708#2]
ATGATTTCCCTTGATACGTTCCTAGCCACGCCCTGGCTTCTCTATACCGCAGTCATTTTCTTCTCCCTCTGCATCGGTAG
CTTCCTGAATGTGGTGATCCTTCGCCTGCCGAAGATGATGCAGCAGGACTGGCGCTGCCAATGCGAAGAGTTCCTGGAGC
TATCAGACGATCAACGCAAGAACGATGAGCCGATTACGCTCTCCAAACCTGCTTCCACCTGCCCTTCTTGCGGCCACAGC
ATTCGCGCCTGGGAAAACGTCCCGGTCATCAGCTACCTGGTTTTGGGCGGCAAATGCGCATCATGCAAAGCGGGCATTTC
ACCGCGATACCCGATGATTGAGGCCATTACCGCGCTGTTTTCGGTGGTGACCATTCTGGTCATGGGGCCGTCTGAAGCTG
CGCTTTGGTCGCTGTTGCTGGTTTGGGTACTGATCGCGCTGACGGTAATCGATTTCGACACCCAGCTGCTGCCAGACAGC
ATGACGCTGCCCCTCATGTGGCTGGGGCTAATCCTGAATTACTTCGACGTGCTGACGGATTTCAGCAGTGCCTTCTGGGG
CGCGGTGGCAGGCTATCTGTCGCTGTGGTCGGTGTACTGGCTGTTCAAGTTGGTAACCGGCAAGGAGGGCATGGGCCACG
GCGATTTCAAGTTATTGGCGGCGCTGGGCGCCTGGCTGGGCTGGGAATTGCTGCCGGCGGTGATTTTGTTGTCGTCTTTG
GTCGGTGCCGTTGTGGGGATTAGTTTGATGGTGTTTCGCAAACACGGTCGCGAAGTGCCAATTCCGTTTGGCCCCTATCT
GGCAGCGGCAGGTTTGCTGTGCCTTTGGTTTGGGGCGGAGATTCAGGCGGCGTGGTATGCGTATCTGGGGGTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.147	93.471	0.515
pilD	Acinetobacter nosocomialis M2	54.779	93.471	0.512
pilD	Vibrio campbellii strain DS40M4	51.228	97.938	0.502
pilD	Vibrio cholerae strain A1552	50.526	97.938	0.495
pilD	Neisseria gonorrhoeae MS11	50.996	86.254	0.44