Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EF_RS02445 | Genome accession | NC_004668 |
| Coordinates | 462000..462458 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis V583 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 455113..505559 | 462000..462458 | within | 0 |
Gene organization within MGE regions
Location: 455113..505559
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EF_RS02395 (EF0489) | - | 455366..456244 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| EF_RS02400 (EF0490) | - | 456264..457079 (+) | 816 | WP_010773698.1 | LPXTG cell wall anchor domain-containing protein | - |
| EF_RS02405 (EF0491) | - | 457105..458376 (+) | 1272 | WP_011109451.1 | CHAP domain-containing protein | - |
| EF_RS02410 (EF0492) | - | 458379..458996 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| EF_RS02415 (EF0493) | - | 458980..459396 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| EF_RS02420 (EF0494) | - | 459396..459710 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| EF_RS02425 (EF0495) | - | 459976..460737 (+) | 762 | WP_010773700.1 | conjugal transfer protein | - |
| EF_RS02430 (EF0496) | - | 460742..461002 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| EF_RS02435 (EF0497) | - | 461002..461391 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| EF_RS02440 (EF0498) | - | 461423..461905 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| EF_RS02445 (EF0499) | ssb | 462000..462458 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| EF_RS02450 (EF0500) | - | 462563..465055 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| EF_RS02455 (EF0501) | - | 465012..465410 (+) | 399 | WP_002370287.1 | lipocalin-like domain-containing protein | - |
| EF_RS02460 (EF0502) | - | 465423..467768 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| EF_RS02465 (EF0503) | - | 467755..470013 (+) | 2259 | WP_010774165.1 | type IV secretory system conjugative DNA transfer family protein | - |
| EF_RS02470 (EF0505) | - | 470536..471321 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| EF_RS02475 (EF0506) | - | 471327..471815 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| EF_RS02480 (EF0507) | - | 472407..472673 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| EF_RS02485 (EF0508) | - | 472706..473206 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| EF_RS02490 (EF0509) | - | 473219..473467 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| EF_RS02495 (EF0510) | - | 473543..473959 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| EF_RS02500 (EF0511) | - | 473983..474567 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| EF_RS02505 (EF0512) | - | 474678..474944 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| EF_RS02510 (EF0513) | - | 474937..475212 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| EF_RS02515 (EF0514) | - | 475403..476047 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| EF_RS02520 | - | 476180..477062 (+) | 883 | Protein_479 | IS256 family transposase | - |
| EF_RS02525 (EF0516) | - | 477367..478404 (-) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| EF_RS02530 (EF0517) | - | 478430..479368 (-) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| EF_RS02535 (EF0518) | - | 479496..479765 (-) | 270 | Protein_482 | LPXTG cell wall anchor domain-containing protein | - |
| EF_RS02540 (EF0519) | - | 479855..480040 (+) | 186 | WP_002358660.1 | hypothetical protein | - |
| EF_RS02545 (EF0520) | - | 480072..480680 (+) | 609 | Protein_484 | IS6 family transposase | - |
| EF_RS02550 (EF0521) | bsh | 481349..482323 (-) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| EF_RS02555 (EF0522) | - | 482547..483191 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| EF_RS02560 (EF0523) | - | 483364..483678 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| EF_RS02565 (EF0524) | cylR2 | 484016..484216 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| EF_RS02570 (EF0525) | cylL-L | 484620..484826 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| EF_RS02575 (EF0526) | cylL-S | 484860..485051 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| EF_RS02580 (EF0527) | - | 485112..488093 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| EF_RS02585 (EF0528) | - | 488105..488917 (+) | 813 | WP_010774166.1 | cysteine peptidase family C39 domain-containing protein | - |
| EF_RS02590 (EF0529) | - | 489003..490175 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| EF_RS02595 (EF0530) | - | 490245..491147 (+) | 903 | Protein_494 | YSIRK-targeted surface antigen transcriptional regulator | - |
| EF_RS02600 (EF0531) | - | 491277..491693 (+) | 417 | WP_002358522.1 | hypothetical protein | - |
| EF_RS16525 | - | 491829..491930 (-) | 102 | Protein_496 | IS30 family transposase | - |
| EF_RS02605 (EF0533) | - | 491918..492655 (+) | 738 | WP_002401428.1 | hypothetical protein | - |
| EF_RS02610 (EF0534) | - | 492701..493321 (-) | 621 | WP_033591050.1 | recombinase family protein | - |
| EF_RS02615 (EF0536) | - | 493505..494124 (+) | 620 | Protein_499 | recombinase family protein | - |
| EF_RS02620 | - | 494233..494415 (+) | 183 | WP_002358529.1 | hypothetical protein | - |
| EF_RS02625 (EF0539) | - | 494871..495689 (-) | 819 | WP_002358531.1 | MurR/RpiR family transcriptional regulator | - |
| EF_RS02630 (EF0540) | - | 495845..496552 (+) | 708 | WP_002358533.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| EF_RS02635 (EF0541) | - | 496545..498047 (+) | 1503 | WP_002358534.1 | PTS transporter subunit EIIC | - |
| EF_RS02640 | - | 498058..498540 (+) | 483 | WP_002358535.1 | PTS sugar transporter subunit IIA | - |
| EF_RS02645 (EF0542) | - | 499173..499937 (-) | 765 | WP_002358536.1 | YibE/F family protein | - |
| EF_RS02650 (EF0543) | - | 499934..500989 (-) | 1056 | WP_002401430.1 | YibE/F family protein | - |
| EF_RS02655 (EF0544) | rpmF | 501328..501501 (+) | 174 | WP_002358539.1 | 50S ribosomal protein L32 | - |
| EF_RS02660 (EF0545) | - | 501523..501900 (+) | 378 | WP_002382844.1 | hypothetical protein | - |
| EF_RS02665 (EF0546) | - | 501952..502356 (+) | 405 | WP_002358541.1 | NusG domain II-containing protein | - |
| EF_RS02670 (EF0547) | - | 502550..503620 (+) | 1071 | WP_010710139.1 | ammonium transporter | - |
| EF_RS02675 (EF0548) | - | 503723..504856 (+) | 1134 | WP_002377959.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| EF_RS16995 | - | 505057..505388 (-) | 332 | Protein_512 | PTS glucose transporter subunit IIA | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=22869 EF_RS02445 WP_002365911.1 462000..462458(+) (ssb) [Enterococcus faecalis V583]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=22869 EF_RS02445 WP_002365911.1 462000..462458(+) (ssb) [Enterococcus faecalis V583]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |