Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C3K23_RS04765 Genome accession   NZ_CP026490
Coordinates   995351..996019 (-) Length   222 a.a.
NCBI ID   WP_164179947.1    Uniprot ID   -
Organism   Streptomyces sp. 604F     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 990351..1001019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS04745 (C3K23_04825) - 991011..991634 (+) 624 WP_023420290.1 pyridoxamine 5'-phosphate oxidase family protein -
  C3K23_RS04750 (C3K23_04830) - 991728..992744 (+) 1017 WP_164183904.1 bile acid:sodium symporter family protein -
  C3K23_RS04755 (C3K23_04835) - 992817..994976 (-) 2160 WP_164179942.1 MMPL family transporter -
  C3K23_RS04760 (C3K23_04840) - 994978..995238 (-) 261 WP_164179945.1 hypothetical protein -
  C3K23_RS04765 (C3K23_04845) vraR 995351..996019 (-) 669 WP_164179947.1 response regulator transcription factor Regulator
  C3K23_RS04770 (C3K23_04850) - 996016..997191 (-) 1176 WP_164179949.1 sensor histidine kinase -
  C3K23_RS04775 (C3K23_04855) - 997340..997873 (-) 534 WP_003947119.1 arginine repressor -
  C3K23_RS04780 (C3K23_04860) - 997896..999140 (-) 1245 WP_023420284.1 acetylornithine transaminase -
  C3K23_RS04785 (C3K23_04865) argB 999137..1000036 (-) 900 WP_023423077.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23924.43 Da        Isoelectric Point: 4.8894

>NTDB_id=227236 C3K23_RS04765 WP_164179947.1 995351..996019(-) (vraR) [Streptomyces sp. 604F]
MITVLLADDQRLVRAGFRSILEDEEGIEVVGEAADGEEAVAAARALRPDVVLMDIRMPGTDGLEAARRITADPRLEAVRV
VILTTFDLDEYVYRALREGVTGFLVKDTEPEELAHAIRVAARGDALISPSVTRRLIAEFAGRVAPPPPDPRLNALTDRER
EVLRLVAAGLTNDRIAATLAVSPATAKTHVSRVMTKLGGRDRSQLVVLAYESGLVSPGWLGG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=227236 C3K23_RS04765 WP_164179947.1 995351..996019(-) (vraR) [Streptomyces sp. 604F]
ATGATCACGGTGCTGCTCGCCGACGACCAGCGGCTCGTCCGCGCCGGATTCCGGTCGATCCTGGAGGACGAGGAGGGCAT
CGAGGTGGTCGGCGAGGCCGCCGACGGGGAGGAGGCCGTCGCCGCCGCCCGCGCGCTCCGGCCCGACGTCGTCCTCATGG
ACATCCGGATGCCCGGCACCGACGGCCTGGAAGCGGCCCGCCGCATCACCGCCGACCCGCGTCTGGAGGCGGTCCGCGTC
GTCATCCTCACCACCTTCGACCTGGACGAGTACGTCTACCGGGCGCTGCGCGAGGGCGTCACCGGCTTCCTCGTCAAGGA
CACCGAACCCGAGGAACTGGCCCACGCCATCCGCGTCGCCGCCCGGGGCGACGCCCTGATCAGCCCCTCGGTCACCCGGC
GCCTCATCGCCGAGTTCGCCGGCCGCGTCGCCCCGCCCCCGCCCGACCCCCGGCTCAACGCCCTCACCGACCGCGAACGC
GAGGTGCTGCGCCTGGTCGCCGCCGGTCTCACCAACGACCGGATCGCCGCCACCCTCGCCGTCAGCCCGGCCACCGCCAA
GACCCACGTCAGCCGCGTCATGACCAAACTCGGTGGCCGCGACCGCTCCCAGCTCGTCGTGCTCGCCTACGAGTCGGGGC
TGGTGTCGCCGGGGTGGCTCGGCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-118)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

96.847

0.378
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.378

Multiple sequence alignment