Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MARSALSMR5_RS06980 Genome accession   NZ_CP020931
Coordinates   1563034..1564254 (-) Length   406 a.a.
NCBI ID   WP_085679889.1    Uniprot ID   A0A1W6K7Z2
Organism   Marinobacter salarius strain SMR5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558034..1569254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARSALSMR5_RS06955 (MARSALSMR5_01423) yacG 1558116..1558304 (-) 189 WP_036209919.1 DNA gyrase inhibitor YacG -
  MARSALSMR5_RS06960 (MARSALSMR5_01424) - 1558325..1560685 (-) 2361 WP_227544155.1 response regulator -
  MARSALSMR5_RS06965 (MARSALSMR5_01425) tsaA 1560718..1561464 (-) 747 WP_036209925.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  MARSALSMR5_RS06970 (MARSALSMR5_01426) coaE 1561470..1562072 (-) 603 WP_085679884.1 dephospho-CoA kinase -
  MARSALSMR5_RS06975 (MARSALSMR5_01427) pilD 1562073..1562948 (-) 876 WP_085679887.1 A24 family peptidase Machinery gene
  MARSALSMR5_RS06980 (MARSALSMR5_01428) pilC 1563034..1564254 (-) 1221 WP_085679889.1 type II secretion system F family protein Machinery gene
  MARSALSMR5_RS06985 (MARSALSMR5_01429) pilB 1564257..1565972 (-) 1716 WP_085679891.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MARSALSMR5_RS06990 (MARSALSMR5_01430) - 1566037..1566279 (+) 243 WP_085679894.1 hypothetical protein -
  MARSALSMR5_RS06995 (MARSALSMR5_01431) - 1566356..1566859 (+) 504 WP_319830337.1 pilin -
  MARSALSMR5_RS07000 (MARSALSMR5_01432) - 1566989..1568482 (+) 1494 WP_198324914.1 O-antigen ligase -
  MARSALSMR5_RS07005 (MARSALSMR5_01433) - 1568583..1569026 (+) 444 WP_085679900.1 pilin -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44407.35 Da        Isoelectric Point: 9.6081

>NTDB_id=227236 MARSALSMR5_RS06980 WP_085679889.1 1563034..1564254(-) (pilC) [Marinobacter salarius strain SMR5]
MAEKAEKLQAFVWEGKDRKGNKTKGEVSGTNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVTNIRNDISSGTSFAGALRKYPKHFDDLYCNLVDSGEKAGALESMLDRIATYLEKT
EILKKKVKKAMTYPAAIIVVAVIVTAILLVKVVPQFESLFKGFGAELPVFTQMVVRLSEWLQTWWFVVLLGIVGTIFLFK
EAVRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAIYRDAIQRIKNDVASGT
QLQATMRQQDVFPVMAVQLTAIGEESGNLDEMLEKVAIHYEAVVDDMVDNLTALLEPIIMAILGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=227236 MARSALSMR5_RS06980 WP_085679889.1 1563034..1564254(-) (pilC) [Marinobacter salarius strain SMR5]
ATGGCAGAGAAAGCAGAGAAACTTCAGGCGTTCGTCTGGGAAGGCAAAGACCGCAAGGGCAACAAAACCAAGGGCGAGGT
GTCTGGCACCAACCTGGCTTTGGTGAAGGCCCAGTTGCGTAAGCAGGGCATTATTCCAGACAAGGTGAAAAAGAAACCAA
AACCCCTGTTTGGCGGCAGCAAAAAGATCACGCCTTTCGACATCGCCATGCTTACCCGCCAGCTCGCCACCATGATGAAG
GCTGGCGTGCCACTGGTTCAGAGTTTCGATATTGTGGCTGACGGCCTTGAGAACAGGGGGCTTCAAGAACTGGTCACCAA
CATTCGTAACGACATTTCGTCCGGCACCAGTTTCGCCGGAGCTTTGAGGAAATATCCCAAGCACTTCGACGACTTGTACT
GCAATCTAGTGGACTCCGGCGAGAAGGCCGGCGCCCTTGAGAGCATGCTGGACCGCATTGCAACTTATCTTGAGAAAACG
GAAATTCTCAAGAAAAAAGTCAAAAAAGCTATGACCTACCCTGCAGCCATCATTGTGGTCGCCGTTATTGTGACTGCCAT
TCTGCTGGTAAAGGTCGTACCCCAGTTTGAAAGCCTGTTCAAAGGCTTTGGCGCAGAGCTACCCGTATTCACGCAGATGG
TTGTCAGGCTGTCTGAATGGCTTCAGACTTGGTGGTTTGTGGTGCTACTCGGTATCGTCGGTACCATCTTTCTGTTCAAG
GAAGCTGTACGACGGTCCCAGAAGTTTTCGGATCTCGTCGACAAATATGTGCTGAAACTGCCCGTTGTCGGCGAAATTCT
GGATAAGTCCGCCGTCGCAAAATTCGGACGGGTACTTTCCACGACCTTTGCGGCCGGTGTACCACTTGTCGATGCCCTGG
ATTCGGTCGCCGGCGCAACGGGCAACGCCATCTATCGCGATGCTATACAGCGAATTAAGAACGATGTTGCGAGCGGTACC
CAACTGCAGGCCACTATGCGCCAACAGGATGTGTTCCCGGTTATGGCCGTGCAATTGACCGCCATTGGTGAAGAATCCGG
TAACCTGGATGAAATGTTGGAGAAAGTCGCCATCCACTACGAGGCTGTCGTGGATGATATGGTCGACAACCTCACAGCCC
TGCTGGAACCGATCATCATGGCGATACTGGGCGTGCTTGTGGGCGGCCTGATCATCGCTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTTGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6K7Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.173

99.754

0.66
  pilC Acinetobacter baumannii D1279779

58.519

99.754

0.584
  pilC Acinetobacter baylyi ADP1

57.389

100

0.574
  pilC Legionella pneumophila strain ERS1305867

53.202

100

0.532
  pilG Neisseria gonorrhoeae MS11

43.21

99.754

0.431
  pilG Neisseria meningitidis 44/76-A

42.963

99.754

0.429
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.406
  pilC Vibrio cholerae strain A1552

41

98.522

0.404

Multiple sequence alignment