Detailed information NTG0227235

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MARSALSMR5_RS06975
• Genome accession: NZ_CP020931
• Coordinates: 1562073..1562948 (-)
• Length: 291 a.a.
• NCBI ID: WP_085679887.1
• Uniprot ID: -
• Organism: Marinobacter salarius strain SMR5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1557073..1567948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MARSALSMR5_RS06950 (MARSALSMR5_01422)	-	1557460..1558014 (-)	555	WP_036209917.1	YfaZ family outer membrane protein	-
MARSALSMR5_RS06955 (MARSALSMR5_01423)	yacG	1558116..1558304 (-)	189	WP_036209919.1	DNA gyrase inhibitor YacG	-
MARSALSMR5_RS06960 (MARSALSMR5_01424)	-	1558325..1560685 (-)	2361	WP_227544155.1	response regulator	-
MARSALSMR5_RS06965 (MARSALSMR5_01425)	tsaA	1560718..1561464 (-)	747	WP_036209925.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MARSALSMR5_RS06970 (MARSALSMR5_01426)	coaE	1561470..1562072 (-)	603	WP_085679884.1	dephospho-CoA kinase	-
MARSALSMR5_RS06975 (MARSALSMR5_01427)	pilD	1562073..1562948 (-)	876	WP_085679887.1	A24 family peptidase	Machinery gene
MARSALSMR5_RS06980 (MARSALSMR5_01428)	pilC	1563034..1564254 (-)	1221	WP_085679889.1	type II secretion system F family protein	Machinery gene
MARSALSMR5_RS06985 (MARSALSMR5_01429)	pilB	1564257..1565972 (-)	1716	WP_085679891.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MARSALSMR5_RS06990 (MARSALSMR5_01430)	-	1566037..1566279 (+)	243	WP_085679894.1	hypothetical protein	-
MARSALSMR5_RS06995 (MARSALSMR5_01431)	-	1566356..1566859 (+)	504	WP_319830337.1	pilin	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32036.03 Da
• Isoelectric Point: 4.9790

>NTDB_id=227235 MARSALSMR5_RS06975 WP_085679887.1 1562073..1562948(-) (pilD) [Marinobacter salarius strain SMR5]
MISLDTFLATPWLLYTAVIFFSLCIGSFLNVVILRLPKMMQQDWRCQCEEFLELSDDQRKNDEPITLSKPASTCPSCGHG
IRAWENVPVISYLVLGGKCASCKAGISPRYPIIEAITALFSVVTILVMGPSEAALWSLLLVWVLIALTVIDFDTQLLPDS
MTLPLMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWELLPAVILLSSL
VGAVVGISLMVFRKHGREVPIPFGPYLAAAGLLCLWFGAEIQAAWFTYLGV

Nucleotide

• Length: 876 bp

>NTDB_id=227235 MARSALSMR5_RS06975 WP_085679887.1 1562073..1562948(-) (pilD) [Marinobacter salarius strain SMR5]
ATGATTTCCCTTGATACGTTCCTGGCCACGCCCTGGCTTCTCTATACCGCAGTCATTTTCTTCTCCCTCTGCATTGGTAG
CTTCCTGAATGTGGTGATCCTTCGCCTGCCGAAGATGATGCAGCAGGACTGGCGCTGCCAATGCGAAGAGTTCCTGGAGC
TATCAGACGATCAACGCAAGAACGATGAGCCGATTACGCTCTCCAAACCTGCCTCCACCTGCCCTTCCTGCGGTCACGGG
ATTCGCGCCTGGGAAAACGTCCCGGTCATCAGCTACCTGGTTTTGGGCGGCAAATGCGCATCATGCAAAGCGGGCATTTC
ACCGCGATACCCAATCATTGAGGCAATTACCGCACTGTTTTCGGTGGTGACCATTCTGGTCATGGGGCCGTCTGAAGCTG
CGCTTTGGTCGCTGTTGCTGGTTTGGGTGCTGATCGCGCTGACGGTAATCGATTTCGACACCCAGCTGCTGCCAGACAGC
ATGACGCTGCCCCTCATGTGGCTGGGGCTAATCCTGAATTACTTCGGCGTGCTGACGGATTTCAGCAGTGCCTTCTGGGG
CGCGGTGGCAGGCTATCTGTCGCTGTGGTCGGTGTACTGGCTGTTCAAGTTGGTAACCGGCAAGGAGGGCATGGGCCACG
GCGATTTCAAGTTATTGGCGGCGCTGGGCGCCTGGCTGGGCTGGGAATTGCTGCCGGCGGTGATTTTGTTGTCGTCTTTG
GTCGGTGCCGTTGTGGGGATTAGTTTGATGGTGTTCCGCAAGCACGGCCGCGAAGTGCCAATTCCGTTCGGGCCCTATTT
GGCGGCGGCGGGTTTGCTCTGCCTTTGGTTTGGGGCAGAAATTCAGGCAGCCTGGTTTACCTATCTGGGGGTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.235	95.189	0.526
pilD	Acinetobacter nosocomialis M2	54.874	95.189	0.522
pilD	Vibrio campbellii strain DS40M4	51.399	98.282	0.505
pilD	Vibrio cholerae strain A1552	50.699	98.282	0.498
pilD	Neisseria gonorrhoeae MS11	51.394	86.254	0.443