Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   B7492_RS20130 Genome accession   NZ_CP020743
Coordinates   3871444..3872682 (-) Length   412 a.a.
NCBI ID   WP_085312214.1    Uniprot ID   A0A1W6AC42
Organism   Bacillus mycoides strain Gnyt1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3866444..3877682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7492_RS20110 (B7492_20090) - 3867786..3869248 (+) 1463 WP_407708113.1 IS1182 family transposase -
  B7492_RS20115 (B7492_20095) recA 3869280..3869705 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  B7492_RS20120 (B7492_20100) - 3869971..3870594 (-) 624 WP_085312212.1 topoisomerase I -
  B7492_RS20125 (B7492_20105) recA 3870692..3871300 (-) 609 Protein_3927 recombinase RecA -
  B7492_RS20130 (B7492_20110) cinA 3871444..3872682 (-) 1239 WP_085312214.1 competence/damage-inducible protein A Machinery gene
  B7492_RS20135 (B7492_20115) pgsA 3872703..3873281 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B7492_RS20140 (B7492_20120) - 3873345..3874241 (-) 897 WP_033731187.1 RodZ domain-containing protein -
  B7492_RS20145 (B7492_20125) - 3874263..3875048 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  B7492_RS20150 (B7492_20130) - 3875187..3875435 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  B7492_RS20155 (B7492_20135) ymfI 3875512..3876225 (-) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -
  B7492_RS20160 (B7492_20140) yfmH 3876343..3877629 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45493.81 Da        Isoelectric Point: 5.1076

>NTDB_id=225684 B7492_RS20130 WP_085312214.1 3871444..3872682(-) (cinA) [Bacillus mycoides strain Gnyt1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTDNNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGGNIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVNKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=225684 B7492_RS20130 WP_085312214.1 3871444..3872682(-) (cinA) [Bacillus mycoides strain Gnyt1]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGATAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGGAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAATAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACCGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6AC42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.08

100

0.592
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.059

98.544

0.454
  cinA Streptococcus suis isolate S10

41.489

91.262

0.379

Multiple sequence alignment