Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VV1_RS07695 Genome accession   NC_004459
Coordinates   1591212..1592438 (-) Length   408 a.a.
NCBI ID   WP_011079549.1    Uniprot ID   A0A3Q0L406
Organism   Vibrio vulnificus CMCP6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586212..1597438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS07655 (VV1_1615) rpsP 1586417..1586665 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  VV1_RS07660 (VV1_1616) rimM 1586681..1587229 (+) 549 WP_011079542.1 ribosome maturation factor RimM -
  VV1_RS07665 (VV1_1617) trmD 1587257..1588006 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VV1_RS07670 (VV1_1618) rplS 1588048..1588401 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  VV1_RS07675 (VV1_1619) yacG 1588609..1588803 (-) 195 WP_011079545.1 DNA gyrase inhibitor YacG -
  VV1_RS07680 (VV1_1620) zapD 1588866..1589606 (-) 741 WP_011079546.1 cell division protein ZapD -
  VV1_RS07685 (VV1_1622) coaE 1589639..1590247 (-) 609 WP_011079547.1 dephospho-CoA kinase -
  VV1_RS07690 (VV1_1623) pilD 1590249..1591118 (-) 870 WP_011079548.1 A24 family peptidase Machinery gene
  VV1_RS07695 (VV1_1624) pilC 1591212..1592438 (-) 1227 WP_011079549.1 type II secretion system F family protein Machinery gene
  VV1_RS07700 (VV1_1625) pilB 1592486..1594174 (-) 1689 WP_011079550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VV1_RS07705 (VV1_1626) - 1594174..1594620 (-) 447 WP_011079551.1 pilin -
  VV1_RS07710 (VV1_1627) nadC 1594840..1595727 (-) 888 WP_011079552.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VV1_RS07715 (VV1_1628) ampD 1595820..1596392 (+) 573 WP_011079553.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45253.58 Da        Isoelectric Point: 10.3569

>NTDB_id=22542 VV1_RS07695 WP_011079549.1 1591212..1592438(-) (pilC) [Vibrio vulnificus CMCP6]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=22542 VV1_RS07695 WP_011079549.1 1591212..1592438(-) (pilC) [Vibrio vulnificus CMCP6]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTTTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAAAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L406

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment