Detailed information NTG0022541

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VV1_RS07690
• Genome accession: NC_004459
• Coordinates: 1590249..1591118 (-)
• Length: 289 a.a.
• NCBI ID: WP_011079548.1
• Uniprot ID: Q56740
• Organism: Vibrio vulnificus CMCP6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1585249..1596118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV1_RS07655 (VV1_1615)	rpsP	1586417..1586665 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
VV1_RS07660 (VV1_1616)	rimM	1586681..1587229 (+)	549	WP_011079542.1	ribosome maturation factor RimM	-
VV1_RS07665 (VV1_1617)	trmD	1587257..1588006 (+)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VV1_RS07670 (VV1_1618)	rplS	1588048..1588401 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
VV1_RS07675 (VV1_1619)	yacG	1588609..1588803 (-)	195	WP_011079545.1	DNA gyrase inhibitor YacG	-
VV1_RS07680 (VV1_1620)	zapD	1588866..1589606 (-)	741	WP_011079546.1	cell division protein ZapD	-
VV1_RS07685 (VV1_1622)	coaE	1589639..1590247 (-)	609	WP_011079547.1	dephospho-CoA kinase	-
VV1_RS07690 (VV1_1623)	pilD	1590249..1591118 (-)	870	WP_011079548.1	A24 family peptidase	Machinery gene
VV1_RS07695 (VV1_1624)	pilC	1591212..1592438 (-)	1227	WP_011079549.1	type II secretion system F family protein	Machinery gene
VV1_RS07700 (VV1_1625)	pilB	1592486..1594174 (-)	1689	WP_011079550.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VV1_RS07705 (VV1_1626)	-	1594174..1594620 (-)	447	WP_011079551.1	pilin	-
VV1_RS07710 (VV1_1627)	nadC	1594840..1595727 (-)	888	WP_011079552.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32295.30 Da
• Isoelectric Point: 6.4630

>NTDB_id=22541 VV1_RS07690 WP_011079548.1 1590249..1591118(-) (pilD) [Vibrio vulnificus CMCP6]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWTGIALALLEISPVSLQDSVFGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=22541 VV1_RS07690 WP_011079548.1 1590249..1591118(-) (pilD) [Vibrio vulnificus CMCP6]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTCTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACACTGCCG
CTGACGTGGACAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGTTCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCAGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGTATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

3D structure

• AlphaFold DB: Q56740

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.163	100	0.772
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457