Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B7L44_RS19015 Genome accession   NZ_CP020588
Coordinates   3900826..3902052 (+) Length   408 a.a.
NCBI ID   WP_083009328.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain SSA3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3895826..3907052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L44_RS18980 (B7L44_18980) rimP 3896498..3897022 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  B7L44_RS19000 (B7L44_19000) secG 3897659..3897988 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  B7L44_RS19005 (B7L44_19005) tpiA 3898001..3898795 (-) 795 WP_083009326.1 triose-phosphate isomerase -
  B7L44_RS19010 (B7L44_19010) pilB 3899086..3900798 (+) 1713 WP_004710829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B7L44_RS19015 (B7L44_19015) pilC 3900826..3902052 (+) 1227 WP_083009328.1 type II secretion system F family protein Machinery gene
  B7L44_RS20585 (B7L44_19020) pilD 3902052..3902912 (+) 861 WP_083009329.1 prepilin peptidase Machinery gene
  B7L44_RS19025 (B7L44_19025) coaE 3902914..3903510 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  B7L44_RS19030 (B7L44_19030) - 3903507..3904421 (-) 915 WP_006580951.1 DMT family transporter -
  B7L44_RS19035 (B7L44_19035) rlmB 3904457..3905206 (-) 750 WP_083009331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  B7L44_RS19040 (B7L44_19040) - 3905308..3905634 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  B7L44_RS19045 (B7L44_19045) - 3905711..3907021 (-) 1311 WP_083009332.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44978.48 Da        Isoelectric Point: 9.7352

>NTDB_id=224572 B7L44_RS19015 WP_083009328.1 3900826..3902052(+) (pilC) [Acinetobacter nosocomialis strain SSA3]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNCFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=224572 B7L44_RS19015 WP_083009328.1 3900826..3902052(+) (pilC) [Acinetobacter nosocomialis strain SSA3]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTCACTACACTCGATATTACGATTTTTACCCGACAACTTGCGACT
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGGGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAGTCAGGTGCACTCGAAACAATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATTAAGAAAGCAATGAAATACCCTGCAACCGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATCTGTTTTCTTCTTTCGGCGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCAGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACTGGTCAACAACTTCAGTTTGCTATGCGAGTATCTAATTGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment