Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   A6J31_RS08680 Genome accession   NZ_CP020431
Coordinates   1686895..1687995 (-) Length   366 a.a.
NCBI ID   WP_142390728.1    Uniprot ID   -
Organism   Streptococcus sp. FDAARGOS_192     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681895..1692995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS08640 (A6J31_08575) - 1682527..1682724 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  A6J31_RS08645 (A6J31_08580) - 1682952..1684145 (-) 1194 WP_002885831.1 acetate kinase -
  A6J31_RS08650 (A6J31_08585) comYH 1684202..1685158 (-) 957 WP_080610972.1 class I SAM-dependent methyltransferase Machinery gene
  A6J31_RS08655 (A6J31_08590) comGG 1685203..1685520 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  A6J31_RS08660 (A6J31_08595) comYF 1685498..1685935 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6J31_RS08665 (A6J31_08600) comGE 1685922..1686152 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  A6J31_RS08670 (A6J31_08605) comYD 1686184..1686612 (-) 429 WP_263970040.1 competence type IV pilus minor pilin ComGD Machinery gene
  A6J31_RS08675 (A6J31_08610) comYC 1686572..1686886 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  A6J31_RS08680 (A6J31_08615) comYB 1686895..1687995 (-) 1101 WP_142390728.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6J31_RS08685 (A6J31_08620) comYA 1687877..1688818 (-) 942 WP_080610975.1 competence type IV pilus ATPase ComGA Machinery gene
  A6J31_RS08690 (A6J31_08625) - 1688898..1689260 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41699.89 Da        Isoelectric Point: 10.1934

>NTDB_id=222897 A6J31_RS08680 WP_142390728.1 1686895..1687995(-) (comYB) [Streptococcus sp. FDAARGOS_192]
MPVKISKAIRQSAGTNSWKAWLNKDISLKGISKGKKLKINQQFKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKENWAVQLVQIFPKLFFVTLCGLLVLSLILYLWVKRQPALVFYRRMAKIPFIGQTVRLYMTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEGLMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=222897 A6J31_RS08680 WP_142390728.1 1686895..1687995(-) (comYB) [Streptococcus sp. FDAARGOS_192]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAATCAGCTGGAACCAACAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAATTTAAGGTTATTCAGCTCTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGTCAGTAGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAACCTTCTAGGGAGTTTAACCAAGATTGAAACCTATATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTTTACCTCAACTGTTAGAGGGAGATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAGATTTTTCCCAAGCTCTT
TTTTGTGACTTTGTGCGGACTGCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGCCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTTATAGGCCAAACTGTCAGACTATATATGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTGCTAGACTTAGTTGCCCTAATGAAAGAGCAAAAATCAAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGGCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCTCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.81

93.716

0.514
  comYB Streptococcus mutans UA159

54.81

93.716

0.514
  comYB Streptococcus gordonii str. Challis substr. CH1

51.312

93.716

0.481
  comGB/cglB Streptococcus mitis NCTC 12261

49.558

92.623

0.459
  comGB/cglB Streptococcus mitis SK321

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae Rx1

48.817

92.35

0.451
  comGB/cglB Streptococcus pneumoniae D39

48.817

92.35

0.451
  comGB/cglB Streptococcus pneumoniae R6

48.817

92.35

0.451
  comGB/cglB Streptococcus pneumoniae TIGR4

48.817

92.35

0.451
  comGB Lactococcus lactis subsp. cremoris KW2

44.985

89.891

0.404

Multiple sequence alignment