Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   A6J31_RS08650 Genome accession   NZ_CP020431
Coordinates   1684202..1685158 (-) Length   318 a.a.
NCBI ID   WP_080610972.1    Uniprot ID   A0A1V0GEZ9
Organism   Streptococcus sp. FDAARGOS_192     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679202..1690158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS08620 (A6J31_08555) proC 1679763..1680533 (+) 771 WP_013991257.1 pyrroline-5-carboxylate reductase -
  A6J31_RS08625 (A6J31_08560) - 1680560..1681222 (-) 663 WP_080610969.1 CPBP family intramembrane glutamic endopeptidase -
  A6J31_RS08630 (A6J31_08565) - 1681335..1681781 (-) 447 WP_080610970.1 CAAX protease -
  A6J31_RS08635 (A6J31_08570) - 1681859..1682515 (-) 657 WP_014632546.1 CPBP family intramembrane glutamic endopeptidase -
  A6J31_RS08640 (A6J31_08575) - 1682527..1682724 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  A6J31_RS08645 (A6J31_08580) - 1682952..1684145 (-) 1194 WP_002885831.1 acetate kinase -
  A6J31_RS08650 (A6J31_08585) comYH 1684202..1685158 (-) 957 WP_080610972.1 class I SAM-dependent methyltransferase Machinery gene
  A6J31_RS08655 (A6J31_08590) comGG 1685203..1685520 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  A6J31_RS08660 (A6J31_08595) comYF 1685498..1685935 (-) 438 WP_002887014.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6J31_RS08665 (A6J31_08600) comGE 1685922..1686152 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  A6J31_RS08670 (A6J31_08605) comYD 1686184..1686612 (-) 429 WP_263970040.1 competence type IV pilus minor pilin ComGD Machinery gene
  A6J31_RS08675 (A6J31_08610) comYC 1686572..1686886 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  A6J31_RS08680 (A6J31_08615) comYB 1686895..1687995 (-) 1101 WP_142390728.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6J31_RS08685 (A6J31_08620) comYA 1687877..1688818 (-) 942 WP_080610975.1 competence type IV pilus ATPase ComGA Machinery gene
  A6J31_RS08690 (A6J31_08625) - 1688898..1689260 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35789.65 Da        Isoelectric Point: 4.3805

>NTDB_id=222893 A6J31_RS08650 WP_080610972.1 1684202..1685158(-) (comYH) [Streptococcus sp. FDAARGOS_192]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRSLNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=222893 A6J31_RS08650 WP_080610972.1 1684202..1685158(-) (comYH) [Streptococcus sp. FDAARGOS_192]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCCCTTATCGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTTCCCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATCCTCTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTTA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGCTATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GEZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment