Detailed information NTG0222895

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: A6J31_RS08670
• Genome accession: NZ_CP020431
• Coordinates: 1686184..1686612 (-)
• Length: 142 a.a.
• NCBI ID: WP_263970040.1
• Uniprot ID: -
• Organism: Streptococcus sp. FDAARGOS_192
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1681184..1691612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J31_RS08630 (A6J31_08565)	-	1681335..1681781 (-)	447	WP_080610970.1	CAAX protease	-
A6J31_RS08635 (A6J31_08570)	-	1681859..1682515 (-)	657	WP_014632546.1	CPBP family intramembrane glutamic endopeptidase	-
A6J31_RS08640 (A6J31_08575)	-	1682527..1682724 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
A6J31_RS08645 (A6J31_08580)	-	1682952..1684145 (-)	1194	WP_002885831.1	acetate kinase	-
A6J31_RS08650 (A6J31_08585)	comYH	1684202..1685158 (-)	957	WP_080610972.1	class I SAM-dependent methyltransferase	Machinery gene
A6J31_RS08655 (A6J31_08590)	comGG	1685203..1685520 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
A6J31_RS08660 (A6J31_08595)	comYF	1685498..1685935 (-)	438	WP_002887014.1	competence type IV pilus minor pilin ComGF	Machinery gene
A6J31_RS08665 (A6J31_08600)	comGE	1685922..1686152 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
A6J31_RS08670 (A6J31_08605)	comYD	1686184..1686612 (-)	429	WP_263970040.1	competence type IV pilus minor pilin ComGD	Machinery gene
A6J31_RS08675 (A6J31_08610)	comYC	1686572..1686886 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
A6J31_RS08680 (A6J31_08615)	comYB	1686895..1687995 (-)	1101	WP_142390728.1	competence type IV pilus assembly protein ComGB	Machinery gene
A6J31_RS08685 (A6J31_08620)	comYA	1687877..1688818 (-)	942	WP_080610975.1	competence type IV pilus ATPase ComGA	Machinery gene
A6J31_RS08690 (A6J31_08625)	-	1688898..1689260 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15759.18 Da
• Isoelectric Point: 10.3019

>NTDB_id=222895 A6J31_RS08670 WP_263970040.1 1686184..1686612(-) (comYD) [Streptococcus sp. FDAARGOS_192]
MRNMVAKAAQWPIRAFTLLESLVTLAVVTFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=222895 A6J31_RS08670 WP_263970040.1 1686184..1686612(-) (comYD) [Streptococcus sp. FDAARGOS_192]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
TGTTACCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAAACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387