Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C2I05_RS01370 Genome accession   NZ_CP026039
Coordinates   234030..235520 (-) Length   496 a.a.
NCBI ID   WP_120028326.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 229030..240520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS01340 (C2I05_01315) gudB 229163..230437 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  C2I05_RS01345 (C2I05_01320) mecB 230593..231177 (-) 585 WP_003230533.1 genetic competence negative regulator -
  C2I05_RS01350 (C2I05_01325) ypbG 231336..232115 (-) 780 WP_249848146.1 metallophosphoesterase -
  C2I05_RS01355 (C2I05_01330) ypbF 232213..232656 (-) 444 WP_029317972.1 YpbF family protein -
  C2I05_RS01360 (C2I05_01335) ypbE 232719..233450 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  C2I05_RS01365 (C2I05_01340) ypbD 233401..234003 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  C2I05_RS01370 (C2I05_01345) recS 234030..235520 (-) 1491 WP_120028326.1 ATP-dependent DNA helicase RecQ Machinery gene
  C2I05_RS01375 (C2I05_01350) gmmB 235513..236571 (-) 1059 WP_120028327.1 helix-turn-helix domain-containing protein -
  C2I05_RS01380 (C2I05_01355) fer 236837..237085 (+) 249 WP_003225461.1 ferredoxin -
  C2I05_RS01385 (C2I05_01360) fmnP 237123..237695 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  C2I05_RS01390 (C2I05_01365) serA 238192..239769 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56507.01 Da        Isoelectric Point: 6.4518

>NTDB_id=222895 C2I05_RS01370 WP_120028326.1 234030..235520(-) (recS) [Bacillus subtilis strain PK1_2]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGTVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMVPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=222895 C2I05_RS01370 WP_120028326.1 234030..235520(-) (recS) [Bacillus subtilis strain PK1_2]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCACGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATTAGCCTATTTG
TTATCGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGTGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment