Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SAG_RS11885 | Genome accession | NC_004116 |
| Coordinates | 1854732..1855148 (-) | Length | 138 a.a. |
| NCBI ID | WP_000609565.1 | Uniprot ID | Q8DXI7 |
| Organism | Streptococcus agalactiae 2603V/R | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1833318..1867117 | 1854732..1855148 | within | 0 |
Gene organization within MGE regions
Location: 1833318..1867117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAG_RS11750 (SAG1835) | - | 1833318..1833722 (-) | 405 | WP_000878124.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| SAG_RS11755 (SAG1836) | - | 1833783..1833968 (-) | 186 | WP_000139836.1 | type II toxin-antitoxin system HicA family toxin | - |
| SAG_RS11760 (SAG1837) | - | 1834175..1835581 (-) | 1407 | WP_000405191.1 | peptidoglycan amidohydrolase family protein | - |
| SAG_RS11765 (SAG1838) | - | 1835585..1835914 (-) | 330 | WP_000192161.1 | phage holin | - |
| SAG_RS11770 (SAG1839) | - | 1835917..1836327 (-) | 411 | WP_001135353.1 | hypothetical protein | - |
| SAG_RS11775 (SAG1840) | - | 1836362..1836700 (-) | 339 | WP_000213864.1 | hypothetical protein | - |
| SAG_RS11780 (SAG1841) | - | 1836703..1836933 (-) | 231 | WP_001071123.1 | hypothetical protein | - |
| SAG_RS11785 (SAG1842) | - | 1836950..1840624 (-) | 3675 | WP_001880132.1 | phage tail spike protein | - |
| SAG_RS11790 (SAG1843) | - | 1840625..1841347 (-) | 723 | WP_000161556.1 | hypothetical protein | - |
| SAG_RS11795 (SAG1844) | - | 1841344..1844079 (-) | 2736 | WP_000140777.1 | phage tail tape measure protein | - |
| SAG_RS11800 (SAG1846) | - | 1844265..1844741 (-) | 477 | WP_000591556.1 | hypothetical protein | - |
| SAG_RS11805 (SAG1847) | - | 1844741..1845424 (-) | 684 | WP_000222195.1 | hypothetical protein | - |
| SAG_RS11810 (SAG1848) | - | 1845439..1845783 (-) | 345 | WP_000508737.1 | hypothetical protein | - |
| SAG_RS11815 (SAG1849) | - | 1845770..1846117 (-) | 348 | WP_001074485.1 | hypothetical protein | - |
| SAG_RS11820 (SAG1850) | - | 1846117..1846422 (-) | 306 | WP_000842788.1 | head-tail adaptor protein | - |
| SAG_RS11825 (SAG1851) | - | 1846419..1846754 (-) | 336 | WP_000153862.1 | phage head-tail connector protein | - |
| SAG_RS11830 (SAG1852) | - | 1846775..1848037 (-) | 1263 | WP_000749069.1 | phage major capsid protein | - |
| SAG_RS11835 (SAG1853) | - | 1848048..1848590 (-) | 543 | WP_000413200.1 | HK97 family phage prohead protease | - |
| SAG_RS11840 (SAG1854) | - | 1848640..1849782 (-) | 1143 | WP_001067328.1 | phage portal protein | - |
| SAG_RS11845 (SAG1855) | - | 1849791..1851503 (-) | 1713 | WP_000230004.1 | terminase TerL endonuclease subunit | - |
| SAG_RS11850 (SAG1856) | - | 1851496..1851981 (-) | 486 | WP_000601033.1 | hypothetical protein | - |
| SAG_RS11855 (SAG1857) | - | 1852069..1852317 (-) | 249 | WP_153204907.1 | HNH endonuclease | - |
| SAG_RS11860 (SAG1858) | - | 1852428..1852715 (-) | 288 | WP_000651008.1 | hypothetical protein | - |
| SAG_RS11865 (SAG1859) | - | 1853005..1853547 (-) | 543 | WP_001028147.1 | site-specific integrase | - |
| SAG_RS11870 (SAG1860) | - | 1853657..1854121 (-) | 465 | WP_000163169.1 | hypothetical protein | - |
| SAG_RS11875 (SAG1861) | - | 1854118..1854465 (-) | 348 | WP_000776714.1 | helix-turn-helix domain-containing protein | - |
| SAG_RS11880 (SAG1862) | - | 1854462..1854722 (-) | 261 | WP_001008140.1 | hypothetical protein | - |
| SAG_RS11885 (SAG1863) | ssb | 1854732..1855148 (-) | 417 | WP_000609565.1 | single-stranded DNA-binding protein | Machinery gene |
| SAG_RS11890 (SAG1864) | - | 1855138..1855344 (-) | 207 | WP_000748199.1 | hypothetical protein | - |
| SAG_RS13745 | - | 1855341..1855697 (-) | 357 | WP_000158822.1 | DUF3310 domain-containing protein | - |
| SAG_RS11900 (SAG1866) | - | 1855697..1856026 (-) | 330 | WP_000793494.1 | DUF1372 family protein | - |
| SAG_RS11905 (SAG1867) | - | 1856026..1856517 (-) | 492 | WP_000169322.1 | MazG-like family protein | - |
| SAG_RS11910 (SAG1868) | - | 1856510..1856914 (-) | 405 | WP_000220553.1 | hypothetical protein | - |
| SAG_RS11915 (SAG1869) | - | 1856911..1858224 (-) | 1314 | WP_000670039.1 | DNA cytosine methyltransferase | - |
| SAG_RS11920 (SAG1870) | - | 1858224..1859045 (-) | 822 | WP_001067868.1 | ATP-binding protein | - |
| SAG_RS11925 (SAG1871) | - | 1859046..1859792 (-) | 747 | WP_000079055.1 | conserved phage C-terminal domain-containing protein | - |
| SAG_RS11930 (SAG1872) | - | 1859770..1860372 (-) | 603 | WP_000712924.1 | hypothetical protein | - |
| SAG_RS11935 (SAG1873) | dnaB | 1860374..1861705 (-) | 1332 | WP_000343910.1 | replicative DNA helicase | - |
| SAG_RS11940 (SAG1874) | - | 1861714..1861932 (-) | 219 | WP_001061695.1 | hypothetical protein | - |
| SAG_RS11945 (SAG1875) | - | 1861956..1862240 (-) | 285 | WP_000998974.1 | hypothetical protein | - |
| SAG_RS11950 (SAG1876) | - | 1862240..1862770 (-) | 531 | WP_001006993.1 | NUMOD4 domain-containing protein | - |
| SAG_RS11955 (SAG1877) | - | 1862833..1863543 (-) | 711 | WP_001002368.1 | ORF6C domain-containing protein | - |
| SAG_RS11960 (SAG1878) | - | 1863546..1863755 (-) | 210 | WP_000082755.1 | helix-turn-helix domain-containing protein | - |
| SAG_RS11965 (SAG1879) | - | 1863816..1864286 (+) | 471 | WP_001052630.1 | hypothetical protein | - |
| SAG_RS13505 (SAG1880) | - | 1864269..1864433 (-) | 165 | WP_000511144.1 | hypothetical protein | - |
| SAG_RS11970 (SAG1882) | - | 1864719..1865081 (+) | 363 | WP_000114553.1 | helix-turn-helix domain-containing protein | - |
| SAG_RS11975 (SAG1883) | - | 1865088..1865468 (+) | 381 | WP_000762727.1 | ImmA/IrrE family metallo-endopeptidase | - |
| SAG_RS11980 (SAG1884) | - | 1865521..1865925 (+) | 405 | WP_001173134.1 | DUF4429 domain-containing protein | - |
| SAG_RS11985 (SAG1885) | - | 1866047..1867117 (+) | 1071 | WP_000179397.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15674.52 Da Isoelectric Point: 4.6604
>NTDB_id=22289 SAG_RS11885 WP_000609565.1 1854732..1855148(-) (ssb) [Streptococcus agalactiae 2603V/R]
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMDDQLPPSFGNSQPMDISDDDLPF
MINNVVLIGRLTRDVELRYTPSNIANATFNLAVNRNFKNAAGDREADFINCVMWRQQAENLANWTKKGMLIGITGRIQTR
SYENQQGQRIYVTEVVADSFQILEKRDNSTNQASMDDQLPPSFGNSQPMDISDDDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=22289 SAG_RS11885 WP_000609565.1 1854732..1855148(-) (ssb) [Streptococcus agalactiae 2603V/R]
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGGATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTAG
ATGATCAATAATGTTGTACTTATTGGCCGCTTGACAAGAGATGTTGAGCTACGTTACACGCCGTCAAACATCGCAAACGC
TACTTTTAACCTAGCAGTCAATCGAAATTTCAAGAATGCTGCTGGTGATCGTGAAGCTGATTTCATCAACTGTGTGATGT
GGCGACAACAAGCTGAAAACTTGGCCAATTGGACGAAAAAAGGAATGCTGATTGGTATTACTGGACGAATCCAGACAAGA
AGCTACGAAAATCAGCAAGGTCAGCGTATCTATGTGACTGAGGTTGTTGCTGACAGCTTCCAGATTCTTGAAAAGCGTGA
TAATTCAACGAACCAGGCAAGCATGGATGACCAATTGCCACCATCATTTGGAAATAGTCAGCCTATGGATATTTCAGATG
ATGATCTACCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.575 |
100 |
0.638 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.259 |
100 |
0.428 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
76.812 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.559 |
100 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.559 |
100 |
0.42 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.943 |
76.812 |
0.391 |