Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J50_RS05385 Genome accession   NZ_CP020422
Coordinates   906831..907202 (+) Length   123 a.a.
NCBI ID   WP_264284714.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901831..912202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J50_RS05320 (A6J50_05235) - 902193..902591 (+) 399 Protein_880 pilin -
  A6J50_RS05325 (A6J50_05240) pilE 902787..903086 (+) 300 WP_014581678.1 pilin Machinery gene
  A6J50_RS05335 (A6J50_05250) - 903405..903797 (+) 393 Protein_882 pilin -
  A6J50_RS05345 (A6J50_05255) - 904072..904473 (+) 402 Protein_883 pilin -
  A6J50_RS05355 (A6J50_05265) - 904912..905337 (+) 426 Protein_884 pilin -
  A6J50_RS05365 (A6J50_05270) - 905444..905836 (+) 393 Protein_885 pilin -
  A6J50_RS14640 - 905997..906365 (+) 369 Protein_886 pilin -
  A6J50_RS05385 (A6J50_05285) pilE 906831..907202 (+) 372 WP_264284714.1 pilin Machinery gene
  A6J50_RS15480 pilE 907172..907333 (+) 162 WP_264284715.1 pilin Machinery gene
  A6J50_RS05405 (A6J50_05295) lpxC 908496..909419 (+) 924 WP_002233293.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 12872.81 Da        Isoelectric Point: 9.6941

>NTDB_id=222714 A6J50_RS05385 WP_264284714.1 906831..907202(+) (pilE) [Neisseria meningitidis strain FDAARGOS_211]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPANNSSAGVASVSTDI
KGKYVQSVTVANGVITAQMASSGVNKKSKAKNSPCGPSVKTVR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=222714 A6J50_RS05385 WP_264284714.1 906831..907202(+) (pilE) [Neisseria meningitidis strain FDAARGOS_211]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCCGCCAACAACAGTTCTGCCGGCGTGGCATCCGTCTCCACCGACATC
AAAGGCAAATATGTTCAAAGCGTTACAGTCGCAAACGGCGTCATTACCGCCCAAATGGCTTCAAGCGGCGTAAACAAGAA
ATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

86.486

90.244

0.78
  pilE Neisseria gonorrhoeae MS11

85.586

90.244

0.772
  pilA2 Legionella pneumophila strain ERS1305867

53.763

75.61

0.407
  comP Acinetobacter baylyi ADP1

49

81.301

0.398
  pilA2 Legionella pneumophila str. Paris

52.688

75.61

0.398
  pilA Acinetobacter nosocomialis M2

45.283

86.179

0.39
  pilA Haemophilus influenzae 86-028NP

47.475

80.488

0.382

Multiple sequence alignment