Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J50_RS15480 Genome accession   NZ_CP020422
Coordinates   907172..907333 (+) Length   53 a.a.
NCBI ID   WP_264284715.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 902172..912333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J50_RS05320 (A6J50_05235) - 902193..902591 (+) 399 Protein_880 pilin -
  A6J50_RS05325 (A6J50_05240) pilE 902787..903086 (+) 300 WP_014581678.1 pilin Machinery gene
  A6J50_RS05335 (A6J50_05250) - 903405..903797 (+) 393 Protein_882 pilin -
  A6J50_RS05345 (A6J50_05255) - 904072..904473 (+) 402 Protein_883 pilin -
  A6J50_RS05355 (A6J50_05265) - 904912..905337 (+) 426 Protein_884 pilin -
  A6J50_RS05365 (A6J50_05270) - 905444..905836 (+) 393 Protein_885 pilin -
  A6J50_RS14640 - 905997..906365 (+) 369 Protein_886 pilin -
  A6J50_RS05385 (A6J50_05285) pilE 906831..907202 (+) 372 WP_264284714.1 pilin Machinery gene
  A6J50_RS15480 pilE 907172..907333 (+) 162 WP_264284715.1 pilin Machinery gene
  A6J50_RS05405 (A6J50_05295) lpxC 908496..909419 (+) 924 WP_002233293.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6J50_RS05420 (A6J50_05305) gnd 910805..912253 (+) 1449 WP_080541932.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 5782.44 Da        Isoelectric Point: 9.4472

>NTDB_id=222743 A6J50_RS15480 WP_264284715.1 907172..907333(+) (pilE) [Neisseria meningitidis strain FDAARGOS_211]
MWAKRQNGSVKWFCGQPVARAAKDDTIKAATDTTTNINTKHLPSTCRDDSSAS

Nucleotide


Download         Length: 162 bp        

>NTDB_id=222743 A6J50_RS15480 WP_264284715.1 907172..907333(+) (pilE) [Neisseria meningitidis strain FDAARGOS_211]
CTGTGGGCCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTGCGCGCGCCGCCAAAGACGACACCAT
CAAAGCCGCCACCGACACCACCACCAACATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATGATTCATCTGCCAGCT
AA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

64.815

100

0.66
  pilE Neisseria gonorrhoeae MS11

64.706

96.226

0.623

Multiple sequence alignment