Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | A6J61_RS05215 | Genome accession | NZ_CP020406 |
| Coordinates | 1073228..1073542 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain FDAARGOS_222 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1068228..1078542
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J61_RS05185 (A6J61_05160) | - | 1069020..1069223 (+) | 204 | WP_070648475.1 | YqgQ family protein | - |
| A6J61_RS05190 (A6J61_05165) | - | 1069220..1070206 (+) | 987 | WP_070648477.1 | ROK family glucokinase | - |
| A6J61_RS05195 (A6J61_05170) | - | 1070206..1070529 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| A6J61_RS05200 (A6J61_05175) | - | 1070533..1071156 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| A6J61_RS05205 (A6J61_05180) | comGA | 1071203..1072177 (+) | 975 | WP_080606567.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A6J61_RS05210 (A6J61_05185) | comGB | 1072149..1073213 (+) | 1065 | WP_070648479.1 | competence type IV pilus assembly protein ComGB | - |
| A6J61_RS05215 (A6J61_05190) | comGC | 1073228..1073542 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J61_RS05220 (A6J61_05195) | comGD | 1073523..1073969 (+) | 447 | WP_226953085.1 | competence type IV pilus minor pilin ComGD | - |
| A6J61_RS05225 (A6J61_05200) | - | 1073956..1074249 (+) | 294 | WP_070648483.1 | hypothetical protein | - |
| A6J61_RS05230 (A6J61_05205) | - | 1074311..1074670 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| A6J61_RS05240 (A6J61_05215) | - | 1074824..1075342 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| A6J61_RS05245 (A6J61_05220) | gcvT | 1075512..1076603 (+) | 1092 | WP_037544364.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| A6J61_RS05250 (A6J61_05225) | gcvPA | 1076620..1077969 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=222301 A6J61_RS05215 WP_002459016.1 1073228..1073542(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_222]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=222301 A6J61_RS05215 WP_002459016.1 1073228..1073542(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_222]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |