Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   SPYM3_RS00645 Genome accession   NC_004070
Coordinates   102242..103180 (+) Length   312 a.a.
NCBI ID   WP_011054114.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS315     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97242..108180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM3_RS00635 (SpyM3_0076) rpoC 98009..101632 (+) 3624 WP_011054112.1 DNA-directed RNA polymerase subunit beta' -
  SPYM3_RS00640 (SpyM3_0077) - 101784..102149 (+) 366 WP_002986560.1 DUF1033 family protein -
  SPYM3_RS00645 (SpyM3_0078) comYA 102242..103180 (+) 939 WP_011054114.1 competence type IV pilus ATPase ComGA Machinery gene
  SPYM3_RS00650 (SpyM3_0079) comYB 103116..104150 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPYM3_RS00655 (SpyM3_0080) comYC 104152..104478 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  SPYM3_RS00660 (SpyM3_0081) comGD 104453..104881 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  SPYM3_RS00665 (SpyM3_0082) comGE 104838..105122 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  SPYM3_RS00670 (SpyM3_0083) comYF 105115..105549 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPYM3_RS00675 (SpyM3_0084) comGG 105533..105859 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  SPYM3_RS00680 (SpyM3_0085) comYH 105957..106910 (+) 954 WP_011054117.1 class I SAM-dependent methyltransferase Machinery gene
  SPYM3_RS00685 (SpyM3_0086) - 106969..108165 (+) 1197 WP_010921803.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35076.28 Da        Isoelectric Point: 8.2452

>NTDB_id=22164 SPYM3_RS00645 WP_011054114.1 102242..103180(+) (comYA) [Streptococcus pyogenes MGAS315]
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRDSLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=22164 SPYM3_RS00645 WP_011054114.1 102242..103180(+) (comYA) [Streptococcus pyogenes MGAS315]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGTTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGATAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.415

99.679

0.612
  comYA Streptococcus mutans UA140

61.415

99.679

0.612
  comYA Streptococcus gordonii str. Challis substr. CH1

60.45

99.679

0.603
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.323

99.359

0.599
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.842

99.679

0.587
  comGA Lactococcus lactis subsp. cremoris KW2

50.161

99.679

0.5
  comGA Latilactobacillus sakei subsp. sakei 23K

39.31

92.949

0.365

Multiple sequence alignment