Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | Vc3S01_RS03215 | Genome accession | NZ_CP020076 |
| Coordinates | 642915..643331 (-) | Length | 138 a.a. |
| NCBI ID | WP_045381308.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain 20130629003S01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 637915..648331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vc3S01_RS03195 (Vc3S01_0560) | coaE | 638415..639029 (-) | 615 | WP_045369833.1 | dephospho-CoA kinase | - |
| Vc3S01_RS03200 (Vc3S01_0561) | pilD | 639030..639899 (-) | 870 | WP_045381296.1 | A24 family peptidase | Machinery gene |
| Vc3S01_RS03205 (Vc3S01_0562) | pilC | 639972..641195 (-) | 1224 | WP_077200206.1 | type II secretion system F family protein | Machinery gene |
| Vc3S01_RS03210 (Vc3S01_0563) | pilB | 641230..642915 (-) | 1686 | WP_045421881.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Vc3S01_RS03215 (Vc3S01_0564) | pilA | 642915..643331 (-) | 417 | WP_045381308.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| Vc3S01_RS03225 (Vc3S01_0565) | nadC | 643596..644483 (-) | 888 | WP_077200208.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| Vc3S01_RS03230 (Vc3S01_0566) | ampD | 644576..645127 (+) | 552 | WP_077200209.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| Vc3S01_RS03235 (Vc3S01_0567) | pdhR | 645532..646299 (+) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 14355.45 Da Isoelectric Point: 8.4771
>NTDB_id=220856 Vc3S01_RS03215 WP_045381308.1 642915..643331(-) (pilA) [Vibrio campbellii strain 20130629003S01]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKNYVTKSEVASAVASLKSVITPAELFYQEKGTFPASEDDLASVGI
NSSSIQNGTLGFASSAIELNISSLSPAKATITRESTGWKCAVSGLTDATNAPKGCPQA
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKNYVTKSEVASAVASLKSVITPAELFYQEKGTFPASEDDLASVGI
NSSSIQNGTLGFASSAIELNISSLSPAKATITRESTGWKCAVSGLTDATNAPKGCPQA
Nucleotide
Download Length: 417 bp
>NTDB_id=220856 Vc3S01_RS03215 WP_045381308.1 642915..643331(-) (pilA) [Vibrio campbellii strain 20130629003S01]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGATTATTGGTGTTTT
GTCTGCAATTGCTGTTCCTGCATATAAAAACTACGTTACAAAAAGCGAAGTTGCTTCAGCAGTTGCATCTTTAAAATCTG
TCATAACACCTGCTGAACTTTTCTATCAAGAGAAAGGAACATTCCCTGCAAGTGAAGATGACTTAGCTTCGGTTGGTATT
AATTCTAGTTCAATTCAAAATGGTACACTTGGATTCGCGTCAAGCGCTATTGAACTAAACATTAGCTCATTGAGTCCTGC
AAAAGCGACGATTACAAGAGAGAGCACCGGGTGGAAGTGCGCTGTCTCAGGTTTGACAGACGCAACAAATGCTCCTAAGG
GCTGTCCTCAAGCATAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGATTATTGGTGTTTT
GTCTGCAATTGCTGTTCCTGCATATAAAAACTACGTTACAAAAAGCGAAGTTGCTTCAGCAGTTGCATCTTTAAAATCTG
TCATAACACCTGCTGAACTTTTCTATCAAGAGAAAGGAACATTCCCTGCAAGTGAAGATGACTTAGCTTCGGTTGGTATT
AATTCTAGTTCAATTCAAAATGGTACACTTGGATTCGCGTCAAGCGCTATTGAACTAAACATTAGCTCATTGAGTCCTGC
AAAAGCGACGATTACAAGAGAGAGCACCGGGTGGAAGTGCGCTGTCTCAGGTTTGACAGACGCAACAAATGCTCCTAAGG
GCTGTCCTCAAGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.273 |
95.652 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
36.667 |
100 |
0.399 |
| pilA | Vibrio cholerae strain A1552 |
36.242 |
100 |
0.391 |
| pilA | Vibrio cholerae C6706 |
36.242 |
100 |
0.391 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.242 |
100 |
0.391 |
| pilA | Acinetobacter baumannii strain A118 |
39.416 |
99.275 |
0.391 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.762 |
100 |
0.391 |