Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Vc3S01_RS03205 Genome accession   NZ_CP020076
Coordinates   639972..641195 (-) Length   407 a.a.
NCBI ID   WP_077200206.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634972..646195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS03165 (Vc3S01_0554) rimM 635011..635559 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  Vc3S01_RS03170 (Vc3S01_0555) trmD 635587..636330 (+) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Vc3S01_RS03175 (Vc3S01_0556) rplS 636372..636725 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  Vc3S01_RS03185 (Vc3S01_0558) yacG 637390..637590 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  Vc3S01_RS03190 (Vc3S01_0559) zapD 637647..638387 (-) 741 WP_012128881.1 cell division protein ZapD -
  Vc3S01_RS03195 (Vc3S01_0560) coaE 638415..639029 (-) 615 WP_045369833.1 dephospho-CoA kinase -
  Vc3S01_RS03200 (Vc3S01_0561) pilD 639030..639899 (-) 870 WP_045381296.1 A24 family peptidase Machinery gene
  Vc3S01_RS03205 (Vc3S01_0562) pilC 639972..641195 (-) 1224 WP_077200206.1 type II secretion system F family protein Machinery gene
  Vc3S01_RS03210 (Vc3S01_0563) pilB 641230..642915 (-) 1686 WP_045421881.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Vc3S01_RS03215 (Vc3S01_0564) pilA 642915..643331 (-) 417 WP_045381308.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Vc3S01_RS03225 (Vc3S01_0565) nadC 643596..644483 (-) 888 WP_077200208.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Vc3S01_RS03230 (Vc3S01_0566) ampD 644576..645127 (+) 552 WP_077200209.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44936.19 Da        Isoelectric Point: 10.3971

>NTDB_id=220854 Vc3S01_RS03205 WP_077200206.1 639972..641195(-) (pilC) [Vibrio campbellii strain 20130629003S01]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVGLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=220854 Vc3S01_RS03205 WP_077200206.1 639972..641195(-) (pilC) [Vibrio campbellii strain 20130629003S01]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACAGAAGTCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACAAGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGGCCTTTTATTGGACTGAGTTTTGTGGGCCTGCTCATTTCCGGC
AAAATCATGTCGCAACGCTCCGACTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACTAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTTAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

73.75

98.28

0.725
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.851

99.263

0.396
  pilG Neisseria gonorrhoeae MS11

39.012

99.509

0.388
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment