Detailed information NTG0220853

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Vc3S01_RS03200
• Genome accession: NZ_CP020076
• Coordinates: 639030..639899 (-)
• Length: 289 a.a.
• NCBI ID: WP_045381296.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain 20130629003S01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 634030..644899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vc3S01_RS03160 (Vc3S01_0553)	rpsP	634735..634983 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
Vc3S01_RS03165 (Vc3S01_0554)	rimM	635011..635559 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
Vc3S01_RS03170 (Vc3S01_0555)	trmD	635587..636330 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Vc3S01_RS03175 (Vc3S01_0556)	rplS	636372..636725 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
Vc3S01_RS03185 (Vc3S01_0558)	yacG	637390..637590 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
Vc3S01_RS03190 (Vc3S01_0559)	zapD	637647..638387 (-)	741	WP_012128881.1	cell division protein ZapD	-
Vc3S01_RS03195 (Vc3S01_0560)	coaE	638415..639029 (-)	615	WP_045369833.1	dephospho-CoA kinase	-
Vc3S01_RS03200 (Vc3S01_0561)	pilD	639030..639899 (-)	870	WP_045381296.1	A24 family peptidase	Machinery gene
Vc3S01_RS03205 (Vc3S01_0562)	pilC	639972..641195 (-)	1224	WP_077200206.1	type II secretion system F family protein	Machinery gene
Vc3S01_RS03210 (Vc3S01_0563)	pilB	641230..642915 (-)	1686	WP_045421881.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Vc3S01_RS03215 (Vc3S01_0564)	pilA	642915..643331 (-)	417	WP_045381308.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
Vc3S01_RS03225 (Vc3S01_0565)	nadC	643596..644483 (-)	888	WP_077200208.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32518.72 Da
• Isoelectric Point: 7.5715

>NTDB_id=220853 Vc3S01_RS03200 WP_045381296.1 639030..639899(-) (pilD) [Vibrio campbellii strain 20130629003S01]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCHSSISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=220853 Vc3S01_RS03200 WP_045381296.1 639030..639899(-) (pilD) [Vibrio campbellii strain 20130629003S01]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTACTTCTGAAAGGCAAGTGCCACAACTGCCACTCGTCCATAAGCGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGTTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75	99.654	0.747
pilD	Acinetobacter nosocomialis M2	51.825	94.81	0.491
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436