Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BV134_RS02885 | Genome accession | NZ_CP020011 |
| Coordinates | 578359..578808 (+) | Length | 149 a.a. |
| NCBI ID | WP_042601842.1 | Uniprot ID | Q5D8C1 |
| Organism | Haemophilus influenzae strain 67P56H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 573359..583808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV134_RS02865 (BV134_585) | rsmE | 573823..574560 (-) | 738 | WP_050822717.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| BV134_RS02870 (BV134_586) | lnt | 574610..576139 (-) | 1530 | WP_080358502.1 | apolipoprotein N-acyltransferase | - |
| BV134_RS02875 (BV134_587) | corC | 576162..577061 (-) | 900 | WP_011961742.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| BV134_RS02880 (BV134_589) | ampD | 577684..578244 (-) | 561 | WP_005648974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BV134_RS02885 | pilA | 578359..578808 (+) | 450 | WP_042601842.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| BV134_RS02890 (BV134_591) | pilB | 578805..580202 (+) | 1398 | WP_042601843.1 | GspE/PulE family protein | Machinery gene |
| BV134_RS02895 (BV134_592) | pilC | 580199..581419 (+) | 1221 | WP_042601844.1 | type II secretion system F family protein | Machinery gene |
| BV134_RS02900 (BV134_593) | pilD | 581416..582108 (+) | 693 | WP_050822711.1 | prepilin peptidase | Machinery gene |
| BV134_RS02905 (BV134_594) | rho | 582162..583424 (-) | 1263 | WP_005666690.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15400.70 Da Isoelectric Point: 8.4623
>NTDB_id=219940 BV134_RS02885 WP_042601842.1 578359..578808(+) (pilA) [Haemophilus influenzae strain 67P56H1]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQASGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQASGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=219940 BV134_RS02885 WP_042601842.1 578359..578808(+) (pilA) [Haemophilus influenzae strain 67P56H1]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCGGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGTACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCG
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCCAGTGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCGGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGTACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCG
GCTGATATTACAACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCCAGTGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
94.631 |
100 |
0.946 |
| pilA | Haemophilus influenzae Rd KW20 |
88.591 |
100 |
0.886 |
| pilA | Glaesserella parasuis strain SC1401 |
56.376 |
100 |
0.564 |
| pilA2 | Legionella pneumophila str. Paris |
39.189 |
99.329 |
0.389 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.189 |
99.329 |
0.389 |
| comP | Acinetobacter baylyi ADP1 |
42.52 |
85.235 |
0.362 |
| pilA | Vibrio campbellii strain DS40M4 |
38.298 |
94.631 |
0.362 |