Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BV134_RS02900 Genome accession   NZ_CP020011
Coordinates   581416..582108 (+) Length   230 a.a.
NCBI ID   WP_050822711.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P56H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 576416..587108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV134_RS02880 (BV134_589) ampD 577684..578244 (-) 561 WP_005648974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BV134_RS02885 pilA 578359..578808 (+) 450 WP_042601842.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV134_RS02890 (BV134_591) pilB 578805..580202 (+) 1398 WP_042601843.1 GspE/PulE family protein Machinery gene
  BV134_RS02895 (BV134_592) pilC 580199..581419 (+) 1221 WP_042601844.1 type II secretion system F family protein Machinery gene
  BV134_RS02900 (BV134_593) pilD 581416..582108 (+) 693 WP_050822711.1 prepilin peptidase Machinery gene
  BV134_RS02905 (BV134_594) rho 582162..583424 (-) 1263 WP_005666690.1 transcription termination factor Rho -
  BV134_RS02910 (BV134_595) metJ 583672..583989 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  BV134_RS02915 (BV134_596) cueR 584003..584389 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  BV134_RS02920 (BV134_597) - 584466..584672 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  BV134_RS02925 (BV134_598) - 584746..584952 (+) 207 WP_012054944.1 heavy-metal-associated domain-containing protein -
  BV134_RS02930 (BV134_599) - 585038..585244 (+) 207 WP_012054944.1 heavy-metal-associated domain-containing protein -
  BV134_RS02935 (BV134_600) - 585330..585536 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26626.62 Da        Isoelectric Point: 8.8544

>NTDB_id=219943 BV134_RS02900 WP_050822711.1 581416..582108(+) (pilD) [Haemophilus influenzae strain 67P56H1]
MIYFTMFLLGGIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLPFQSSVSSIQQKKCSHILRYFLSVGVGFIFLQIAF
KDSIFTVWLGATLLILWAISYLDWHYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSVASFFIVFYAIYWLAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFLPFAPFMNLSAIIIYLVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=219943 BV134_RS02900 WP_050822711.1 581416..582108(+) (pilD) [Haemophilus influenzae strain 67P56H1]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGCCATTTCAGTCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCAGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGCTAGGAGCCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGTTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGTGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGCTTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTTTACCTTTTGCCCCTT
TTATGAATTTATCGGCTATCATCATTTATCTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90.435

100

0.904
  pilD Haemophilus influenzae Rd KW20

90

100

0.9

Multiple sequence alignment