Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C0J56_RS00375 Genome accession   NZ_CP025542
Coordinates   80280..81374 (-) Length   364 a.a.
NCBI ID   WP_134922223.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 75280..86374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS00345 (C0J56_00345) aroE 76083..76904 (-) 822 WP_134922218.1 shikimate dehydrogenase -
  C0J56_RS00350 (C0J56_00350) hemF 76918..77832 (-) 915 WP_134922219.1 oxygen-dependent coproporphyrinogen oxidase -
  C0J56_RS00355 (C0J56_00355) - 77997..78974 (+) 978 WP_134922220.1 NADPH:quinone reductase -
  C0J56_RS00370 (C0J56_00365) - 79661..80218 (-) 558 WP_134922222.1 L-threonylcarbamoyladenylate synthase -
  C0J56_RS00375 (C0J56_00370) dprA 80280..81374 (-) 1095 WP_134922223.1 DNA-processing protein DprA Machinery gene
  C0J56_RS00380 (C0J56_00375) tsaP 81455..82480 (-) 1026 WP_134922224.1 LysM domain-containing protein Machinery gene
  C0J56_RS00385 (C0J56_00380) def 82650..83156 (+) 507 WP_042731214.1 peptide deformylase -
  C0J56_RS00390 (C0J56_00385) fmt 83229..84188 (+) 960 WP_134922225.1 methionyl-tRNA formyltransferase -
  C0J56_RS00395 (C0J56_00390) rsmB 84185..85495 (+) 1311 WP_134922226.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38485.12 Da        Isoelectric Point: 6.8305

>NTDB_id=219311 C0J56_RS00375 WP_134922223.1 80280..81374(-) (dprA) [Pseudomonas fluorescens strain 2P24]
MSLPESAPVSPAELEARLRLQRLPELGPKRFMTLMEAFGSASKAISAPASAWRALGLPLACAEARRNPDVRDGAAHALAW
LERADQHLLMWDQPDYPALLAQISDAPPLLFVAGDTSILEKPQLAMVGSRRASRPGMDTAAAFSRSLAGAGFVITSGLAL
GIDAAAHQAALDVGGRTVGVLGTGLENFYPQRNRRLADAMIAQGSAVLSEFPLDAAPHASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAALVETVEHILEALRGWQQLPPASEPVPVTHPLLRLL
HAAPLSSEALADASGWGLPKVLAALTELEMEGRATCDNGRWFAR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=219311 C0J56_RS00375 WP_134922223.1 80280..81374(-) (dprA) [Pseudomonas fluorescens strain 2P24]
ATGTCATTACCTGAATCTGCTCCGGTTTCCCCTGCGGAACTGGAGGCCCGGCTACGCCTCCAACGCTTGCCGGAACTGGG
ACCCAAGCGGTTCATGACCCTGATGGAGGCCTTCGGCTCGGCGTCCAAGGCCATCAGCGCACCGGCCAGCGCCTGGCGCG
CATTGGGCTTGCCGCTGGCCTGCGCCGAGGCCCGGCGCAACCCCGATGTACGTGACGGCGCCGCCCATGCATTGGCCTGG
CTAGAGCGTGCGGACCAGCATTTACTGATGTGGGACCAACCCGACTATCCGGCGCTACTGGCGCAAATCAGCGATGCGCC
GCCGCTGCTGTTCGTCGCCGGCGACACCTCGATCCTGGAAAAACCCCAGCTGGCGATGGTCGGCAGTCGTCGGGCATCGC
GGCCGGGCATGGACACCGCGGCAGCGTTTTCCCGCAGCCTGGCCGGGGCCGGTTTTGTCATCACCAGCGGCCTGGCCCTG
GGCATTGATGCGGCGGCTCATCAGGCGGCGCTGGATGTGGGCGGGCGCACCGTCGGGGTGCTGGGCACCGGCCTGGAAAA
TTTTTATCCACAGCGCAATCGTCGGCTGGCGGACGCGATGATTGCCCAAGGCAGCGCGGTATTGTCGGAGTTCCCGTTGG
ACGCCGCGCCCCATGCCAGCAACTTTCCGCGTCGCAACCGGATCATCAGTGGCTTGTCCCTGGGTGTGCTGGTGGTCGAG
GCCAGTGTCGCCAGCGGCTCGCTGATCACCGCCCGACTGGCGGCGGAACAGGGTCGCGAGGTCTACGCCATCCCTGGATC
GATCCATCACCCCGGGGCCCGAGGCTGCCATCAGTTGATCCGCGACGGTGCGGCGCTGGTGGAAACCGTCGAGCACATCC
TTGAGGCGCTACGCGGTTGGCAACAGTTACCGCCGGCCTCGGAACCCGTGCCCGTGACCCATCCGCTGCTACGCCTGCTG
CATGCCGCGCCGCTGAGCAGCGAAGCGCTGGCCGACGCCAGTGGCTGGGGTTTGCCCAAGGTGCTGGCGGCGCTGACCGA
GCTGGAAATGGAAGGACGCGCCACCTGTGACAACGGACGCTGGTTCGCGCGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)

DprA winged helix domain (WHD_DprA)

(304-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

41.779

100

0.426
  dprA Legionella pneumophila strain ERS1305867

42.609

94.78

0.404
  dprA Neisseria meningitidis strain C311

47.619

80.769

0.385
  dprA Neisseria meningitidis MC58

47.619

80.769

0.385
  dprA Neisseria gonorrhoeae strain FA1090

46.488

82.143

0.382
  dprA Neisseria gonorrhoeae MS11

46.154

82.143

0.379
  dprA Glaesserella parasuis strain SC1401

46.552

79.67

0.371
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.96

96.978

0.368
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

45.238

80.769

0.365
  dprA Vibrio cholerae strain A1552

45.238

80.769

0.365

Multiple sequence alignment