Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C0J56_RS00380 Genome accession   NZ_CP025542
Coordinates   81455..82480 (-) Length   341 a.a.
NCBI ID   WP_134922224.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 76455..87480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS00350 (C0J56_00350) hemF 76918..77832 (-) 915 WP_134922219.1 oxygen-dependent coproporphyrinogen oxidase -
  C0J56_RS00355 (C0J56_00355) - 77997..78974 (+) 978 WP_134922220.1 NADPH:quinone reductase -
  C0J56_RS00370 (C0J56_00365) - 79661..80218 (-) 558 WP_134922222.1 L-threonylcarbamoyladenylate synthase -
  C0J56_RS00375 (C0J56_00370) dprA 80280..81374 (-) 1095 WP_134922223.1 DNA-processing protein DprA Machinery gene
  C0J56_RS00380 (C0J56_00375) tsaP 81455..82480 (-) 1026 WP_134922224.1 LysM domain-containing protein Machinery gene
  C0J56_RS00385 (C0J56_00380) def 82650..83156 (+) 507 WP_042731214.1 peptide deformylase -
  C0J56_RS00390 (C0J56_00385) fmt 83229..84188 (+) 960 WP_134922225.1 methionyl-tRNA formyltransferase -
  C0J56_RS00395 (C0J56_00390) rsmB 84185..85495 (+) 1311 WP_134922226.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C0J56_RS00400 (C0J56_00395) trkA 85521..86894 (+) 1374 WP_134922227.1 Trk system potassium transporter TrkA -
  C0J56_RS00405 (C0J56_00400) - 87071..87382 (+) 312 WP_134922228.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37300.54 Da        Isoelectric Point: 8.2410

>NTDB_id=219312 C0J56_RS00380 WP_134922224.1 81455..82480(-) (tsaP) [Pseudomonas fluorescens strain 2P24]
MRKSLLALLLLASAGIAHGQVQLREGFPQQYTVVTGDTLWDISGKYLREPWKWPELWQANPQIENPNLIYPGDTLSLVYV
NGQPRLTLNRGASRGTIKLSPRIRSSPVADAIPSIPLQAINSFLLSNRIVDTPEEFNKAPYIVAGNAERVLSGMGDRVFA
RGSFDAGQSAYGIFRQGKVYTDPETKEFLGINADDIGGGEVVATEGDVTTLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPKSDINGLILDVPRGVTQIGALDVVTLNKGRRDGLTEGNVLAVMKTGETVRDRITGEPVKIPDERAGLLMVFRTYDKL
SYGLVLYASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=219312 C0J56_RS00380 WP_134922224.1 81455..82480(-) (tsaP) [Pseudomonas fluorescens strain 2P24]
ATGAGGAAATCACTACTCGCCCTGCTGCTCCTGGCCTCGGCCGGTATCGCGCACGGGCAAGTGCAACTTCGGGAAGGTTT
TCCCCAGCAATACACAGTGGTGACGGGGGACACACTCTGGGACATTTCCGGCAAATACCTGCGCGAGCCGTGGAAATGGC
CGGAGCTCTGGCAGGCCAACCCGCAGATCGAAAACCCCAACCTGATCTATCCCGGCGATACCCTGTCGCTGGTCTACGTC
AACGGCCAACCGCGCCTGACCCTCAATCGCGGCGCCTCCCGCGGCACGATCAAGCTGTCGCCGCGCATTCGCAGCTCGCC
GGTGGCCGATGCCATCCCGAGCATTCCGCTGCAAGCCATCAACAGTTTTTTGCTGAGCAATCGCATCGTCGACACGCCTG
AGGAGTTCAACAAGGCGCCATATATCGTCGCCGGCAACGCCGAACGGGTCCTCAGCGGCATGGGGGATCGGGTCTTTGCC
CGTGGCTCGTTCGATGCGGGCCAGTCGGCGTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGATCCAGAGACTAAGGA
ATTTTTGGGCATCAACGCCGACGACATCGGCGGTGGCGAGGTGGTCGCCACCGAAGGCGACGTCACCACCCTGGCCCTGC
AACGCACCACCCAGGAAGTACGCCTGGGTGATCGCCTGTTCAGCGGCGAAGAGCGCTCGATCAATTCGACGTTCATGCCC
AGCGCGCCGAAATCGGACATCAACGGGTTGATCCTGGACGTGCCCCGGGGCGTGACCCAGATCGGCGCGCTGGACGTGGT
CACCCTGAACAAGGGCCGCCGTGACGGACTGACCGAAGGCAATGTGCTGGCGGTGATGAAGACCGGTGAAACCGTACGCG
ACCGCATCACCGGCGAGCCGGTGAAAATCCCCGATGAGCGCGCTGGCCTGCTGATGGTGTTCCGCACCTACGACAAGCTC
AGCTACGGCCTGGTGCTGTACGCCTCGCGCTCGTTGGCAGTGCTCGACAAGGTCCGTAATCCATAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

34.153

100

0.367