Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B0D95_RS10545 Genome accession   NZ_CP019799
Coordinates   2404658..2405938 (+) Length   426 a.a.
NCBI ID   WP_078043867.1    Uniprot ID   -
Organism   Cellvibrio sp. PSBB023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2399658..2410938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D95_RS10530 (B0D95_10505) nadC 2400996..2401850 (+) 855 WP_078043864.1 carboxylating nicotinate-nucleotide diphosphorylase -
  B0D95_RS10535 (B0D95_10510) - 2402128..2402472 (-) 345 WP_371453658.1 pilin -
  B0D95_RS21120 - 2402493..2402601 (-) 109 Protein_2075 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B0D95_RS10540 (B0D95_10515) pilB 2402927..2404654 (+) 1728 WP_078043866.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B0D95_RS10545 (B0D95_10520) pilC 2404658..2405938 (+) 1281 WP_078043867.1 type II secretion system F family protein Machinery gene
  B0D95_RS10550 (B0D95_10525) pilD 2405983..2406837 (+) 855 WP_078045710.1 A24 family peptidase Machinery gene
  B0D95_RS10555 (B0D95_10530) coaE 2406898..2407509 (+) 612 WP_078043868.1 dephospho-CoA kinase -
  B0D95_RS10560 (B0D95_10535) yacG 2407518..2407721 (+) 204 WP_078043869.1 DNA gyrase inhibitor YacG -
  B0D95_RS10565 (B0D95_10540) - 2407750..2408703 (-) 954 WP_210403613.1 Nudix family hydrolase -
  B0D95_RS10570 (B0D95_10545) argJ 2408719..2409939 (-) 1221 WP_078043871.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45829.14 Da        Isoelectric Point: 9.9423

>NTDB_id=218424 B0D95_RS10545 WP_078043867.1 2404658..2405938(+) (pilC) [Cellvibrio sp. PSBB023]
MALTTTTKTASSVSKAKAATKTKQIPTTNTYIYKGLDKKGNKIQGEINGGSPTIVRTILAKQGITAKSVSKKAKPLFGSS
GKSIKPADIAVFSRQMATMMKAGVPLVQAFDIVADGLENPNLKKLVLQIRDSVAAGGGFANSLREHPKYFDDLFCNLVDA
GEQSGALETMLDRIATYKEKTEALKAKIKKALTYPIAVVLVAIVVTGILLVKVVPQFAETFRDFGAELPAFTLFVLYLSD
LAQTYWFIILLGMGVAAFMFKLATQKSQAFAYLVDKYILKFPIVGKILYLSVMARFARTLATTFAAGVPLIDALTSVSGA
AGNRIYAEAIIKVREDVSTGIQLNTSLKARSMFPTLLIQMAAIGEESGALDAMLDKVALYYEEAVDNMVDSLTSLLEPLI
MSVLGILVGGLMIAMYLPIFQIGSVV

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=218424 B0D95_RS10545 WP_078043867.1 2404658..2405938(+) (pilC) [Cellvibrio sp. PSBB023]
ATGGCACTAACAACTACTACAAAAACGGCTAGCTCGGTAAGTAAAGCCAAAGCTGCCACAAAGACCAAGCAAATTCCGAC
AACCAACACCTATATTTACAAAGGTTTGGATAAAAAGGGCAATAAGATCCAAGGGGAAATTAACGGCGGTAGCCCAACGA
TAGTTAGAACTATCCTTGCAAAGCAAGGTATTACAGCCAAGTCCGTCTCCAAAAAAGCCAAACCACTTTTTGGGTCTAGT
GGCAAATCAATTAAACCTGCCGATATCGCCGTTTTCTCTCGTCAAATGGCAACGATGATGAAAGCTGGCGTACCACTTGT
TCAGGCATTTGACATAGTGGCTGATGGGCTGGAAAACCCGAACTTAAAAAAACTGGTCCTACAAATTAGAGACAGTGTCG
CGGCAGGGGGAGGATTCGCTAACTCGTTAAGAGAGCACCCCAAATATTTTGATGACTTATTCTGCAACCTTGTCGACGCC
GGTGAGCAATCAGGCGCACTGGAAACAATGCTTGACCGAATTGCAACCTACAAAGAAAAAACTGAAGCACTAAAAGCGAA
AATCAAAAAGGCATTGACTTATCCAATCGCGGTAGTATTAGTTGCAATTGTTGTAACAGGCATACTCTTGGTCAAAGTTG
TTCCTCAATTTGCCGAAACATTTCGTGACTTCGGCGCTGAACTACCCGCTTTCACTTTATTTGTATTATACCTTTCAGAC
TTGGCGCAAACTTATTGGTTTATCATTTTGCTTGGAATGGGAGTCGCAGCATTTATGTTTAAACTTGCTACTCAAAAGTC
ACAAGCCTTTGCTTATTTAGTAGACAAATATATTCTCAAATTTCCAATCGTTGGAAAAATTCTATACCTTTCTGTAATGG
CGAGATTCGCCAGAACACTTGCCACTACATTTGCTGCAGGCGTACCTCTCATTGATGCATTGACATCCGTATCTGGTGCA
GCAGGCAACAGGATATATGCAGAAGCAATCATTAAGGTCAGAGAGGATGTGTCTACAGGTATCCAGCTAAATACTTCGTT
AAAAGCTAGGTCAATGTTTCCAACACTTCTTATTCAAATGGCAGCAATTGGAGAGGAGTCCGGTGCACTTGATGCCATGC
TCGACAAGGTTGCGCTATATTATGAGGAGGCTGTAGACAATATGGTTGACAGTCTAACATCTTTGCTGGAGCCGTTAATT
ATGTCAGTGCTCGGGATTCTCGTAGGCGGATTAATGATAGCAATGTATCTTCCCATCTTTCAAATTGGCTCGGTTGTATA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-215)

Type II secretion system (T2SS), protein F (T2SSF)

(296-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.406

93.662

0.585
  pilC Acinetobacter baylyi ADP1

57.317

96.244

0.552
  pilC Acinetobacter baumannii D1279779

55.854

96.244

0.538
  pilC Legionella pneumophila strain ERS1305867

55.198

94.836

0.523
  pilG Neisseria meningitidis 44/76-A

42.569

93.192

0.397
  pilG Neisseria gonorrhoeae MS11

42.569

93.192

0.397
  pilC Vibrio cholerae strain A1552

41.481

95.07

0.394
  pilC Vibrio campbellii strain DS40M4

40.648

94.131

0.383

Multiple sequence alignment