Detailed information NTG0218425

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B0D95_RS10550
• Genome accession: NZ_CP019799
• Coordinates: 2405983..2406837 (+)
• Length: 284 a.a.
• NCBI ID: WP_078045710.1
• Uniprot ID: A0A1U9NGG6
• Organism: Cellvibrio sp. PSBB023
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2400983..2411837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B0D95_RS10530 (B0D95_10505)	nadC	2400996..2401850 (+)	855	WP_078043864.1	carboxylating nicotinate-nucleotide diphosphorylase	-
B0D95_RS10535 (B0D95_10510)	-	2402128..2402472 (-)	345	WP_371453658.1	pilin	-
B0D95_RS21120	-	2402493..2402601 (-)	109	Protein_2075	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
B0D95_RS10540 (B0D95_10515)	pilB	2402927..2404654 (+)	1728	WP_078043866.1	type IV-A pilus assembly ATPase PilB	Machinery gene
B0D95_RS10545 (B0D95_10520)	pilC	2404658..2405938 (+)	1281	WP_078043867.1	type II secretion system F family protein	Machinery gene
B0D95_RS10550 (B0D95_10525)	pilD	2405983..2406837 (+)	855	WP_078045710.1	A24 family peptidase	Machinery gene
B0D95_RS10555 (B0D95_10530)	coaE	2406898..2407509 (+)	612	WP_078043868.1	dephospho-CoA kinase	-
B0D95_RS10560 (B0D95_10535)	yacG	2407518..2407721 (+)	204	WP_078043869.1	DNA gyrase inhibitor YacG	-
B0D95_RS10565 (B0D95_10540)	-	2407750..2408703 (-)	954	WP_210403613.1	Nudix family hydrolase	-
B0D95_RS10570 (B0D95_10545)	argJ	2408719..2409939 (-)	1221	WP_078043871.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 31378.39 Da
• Isoelectric Point: 7.0373

>NTDB_id=218425 B0D95_RS10550 WP_078045710.1 2405983..2406837(+) (pilD) [Cellvibrio sp. PSBB023]
MACALVLGLLVGSFLNVVIYRLPKMMERDWQHQCREFLANDSNIAALPEPSEKQESFNLMVPASRCPSCGHKIRAWENIP
VISYAFLGGKCSSCKTTISIRYPIIELATGILSVVAIAYVGVSWNGLAALLLTWSLIALTMIDLDTYLLPDDITLPLLWL
GLIINSFGMFTDLPSALWGAIAGYMSLWMVYQLFKLVTGKEGMGFGDFKLLAALGAWMGWQMLPQIILLSSLVGAVIGIT
MIVVRGRDKNIPIPFGPYLAIAGWIAFIWGDTINQTYLKLFVVY

Nucleotide

• Length: 855 bp

>NTDB_id=218425 B0D95_RS10550 WP_078045710.1 2405983..2406837(+) (pilD) [Cellvibrio sp. PSBB023]
ATGGCTTGCGCATTAGTCCTCGGTTTATTAGTTGGCAGCTTTCTTAATGTGGTGATCTACCGCTTACCCAAAATGATGGA
ACGCGACTGGCAGCACCAATGCAGAGAGTTTTTGGCCAACGATAGCAATATTGCAGCCCTCCCCGAACCCAGCGAAAAGC
AGGAATCCTTTAATTTAATGGTGCCTGCTTCGCGCTGCCCAAGCTGCGGGCATAAAATTCGCGCATGGGAAAATATTCCT
GTTATCAGTTATGCATTTTTGGGTGGAAAATGCTCTAGCTGTAAAACTACCATATCTATTCGCTACCCAATTATTGAACT
GGCTACCGGTATCTTATCGGTTGTGGCTATCGCTTACGTTGGTGTTAGCTGGAATGGATTAGCAGCACTACTGCTCACCT
GGTCATTAATTGCATTGACTATGATCGATCTGGACACCTACTTGCTGCCAGATGATATAACGCTGCCGCTATTGTGGCTG
GGGCTGATCATCAATAGCTTCGGAATGTTCACAGACTTGCCCAGCGCCCTGTGGGGTGCCATAGCGGGATATATGTCGCT
GTGGATGGTTTACCAGCTCTTTAAGTTGGTCACAGGCAAAGAAGGCATGGGCTTTGGAGATTTCAAATTGTTAGCCGCAC
TGGGGGCATGGATGGGCTGGCAAATGCTACCGCAAATTATTTTATTGTCGTCGCTGGTTGGTGCAGTGATTGGGATTACC
ATGATAGTTGTTCGTGGGCGCGATAAAAATATCCCCATCCCTTTTGGCCCCTACCTCGCAATTGCAGGCTGGATTGCATT
TATTTGGGGCGATACAATCAACCAAACCTATTTAAAATTATTTGTTGTCTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (131-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (6-117)

3D structure

• AlphaFold DB: A0A1U9NGG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	56.475	97.887	0.553
pilD	Acinetobacter nosocomialis M2	55.755	97.887	0.546
pilD	Neisseria gonorrhoeae MS11	54.444	95.07	0.518
pilD	Vibrio cholerae strain A1552	50	100	0.5
pilD	Vibrio campbellii strain DS40M4	50.719	97.887	0.496