Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   B1222_RS27010 Genome accession   NZ_CP019794
Coordinates   596185..596652 (-) Length   155 a.a.
NCBI ID   WP_315861963.1    Uniprot ID   -
Organism   Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 567107..609022 596185..596652 within 0


Gene organization within MGE regions


Location: 567107..609022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1222_RS02750 (B1222_02735) - 568014..568202 (-) 189 WP_024094220.1 MarR family transcriptional regulator -
  B1222_RS02760 (B1222_02745) - 568531..568863 (+) 333 WP_077995479.1 DUF4064 domain-containing protein -
  B1222_RS02765 (B1222_02750) - 569255..570496 (-) 1242 WP_158672784.1 ADP-ribosyltransferase -
  B1222_RS02770 (B1222_02755) - 570827..571756 (-) 930 WP_077995481.1 RICIN domain-containing protein -
  B1222_RS02775 (B1222_02760) - 571927..573150 (+) 1224 WP_077995397.1 IS256 family transposase -
  B1222_RS02780 (B1222_02765) - 573171..575294 (-) 2124 WP_077995482.1 binary toxin-like calcium binding domain-containing protein -
  B1222_RS02785 (B1222_02770) - 575365..576174 (-) 810 WP_077995483.1 hypothetical protein -
  B1222_RS02790 (B1222_02775) - 576376..577600 (-) 1225 Protein_574 IS256 family transposase -
  B1222_RS25495 - 578494..578595 (-) 102 WP_237088715.1 YjcZ family sporulation protein -
  B1222_RS02800 (B1222_02785) - 578966..579208 (+) 243 WP_374050032.1 YqaE/Pmp3 family membrane protein -
  B1222_RS02805 (B1222_02790) - 579410..579841 (+) 432 WP_051427803.1 universal stress protein -
  B1222_RS02810 (B1222_02795) - 579844..581363 (-) 1520 Protein_578 IS1182 family transposase -
  B1222_RS24470 - 581744..581890 (+) 147 WP_188318608.1 hypothetical protein -
  B1222_RS02815 (B1222_02800) - 582015..582956 (-) 942 WP_188318609.1 LCP family protein -
  B1222_RS02820 (B1222_02805) - 583444..583866 (-) 423 WP_172423310.1 RicAFT regulatory complex protein RicA family protein -
  B1222_RS02825 (B1222_02810) miaB 583898..585378 (-) 1481 Protein_582 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  B1222_RS02830 (B1222_02815) pduL 585510..586079 (-) 570 WP_036654067.1 phosphate propanoyltransferase -
  B1222_RS02835 (B1222_02820) - 586203..587068 (-) 866 Protein_584 2-oxoacid:ferredoxin oxidoreductase subunit beta -
  B1222_RS02840 (B1222_02825) - 587056..588804 (-) 1749 Protein_585 2-oxoacid:acceptor oxidoreductase subunit alpha -
  B1222_RS02845 (B1222_02830) - 589009..589943 (-) 935 Protein_586 dipeptidase -
  B1222_RS02850 (B1222_02835) - 590100..590360 (-) 261 WP_005550495.1 stage V sporulation protein S -
  B1222_RS02855 (B1222_02840) - 590472..591266 (-) 795 WP_042119010.1 TIGR00282 family metallophosphoesterase -
  B1222_RS02860 (B1222_02845) rny 591374..592915 (-) 1542 WP_036654059.1 ribonuclease Y -
  B1222_RS02865 (B1222_02850) - 593411..594067 (-) 657 WP_077995485.1 RecX family transcriptional regulator -
  B1222_RS27615 recA 594166..594429 (-) 264 WP_390905536.1 hypothetical protein Machinery gene
  B1222_RS27620 recA 594469..595135 (-) 667 Protein_592 recombinase RecA -
  B1222_RS27005 - 595397..596179 (-) 783 WP_315861962.1 nicotinamide-nucleotide amidohydrolase family protein -
  B1222_RS27010 cinA 596185..596652 (-) 468 WP_315861963.1 molybdopterin-binding protein Machinery gene
  B1222_RS02880 (B1222_02865) pgsA 596781..597359 (-) 579 WP_024094239.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B1222_RS02885 (B1222_02870) rimO 597356..598681 (-) 1326 Protein_596 30S ribosomal protein S12 methylthiotransferase RimO -
  B1222_RS02890 (B1222_02875) - 598824..599315 (-) 492 WP_077995486.1 YajQ family cyclic di-GMP-binding protein -
  B1222_RS02895 (B1222_02880) - 599343..600350 (-) 1008 WP_024094241.1 RodZ family helix-turn-helix domain-containing protein -
  B1222_RS02900 (B1222_02885) - 600403..601166 (-) 764 Protein_599 DUF3388 domain-containing protein -
  B1222_RS02905 (B1222_02890) - 601269..602132 (-) 864 WP_077995487.1 hypothetical protein -
  B1222_RS02910 (B1222_02895) - 602236..602487 (-) 252 WP_023484662.1 DUF3243 domain-containing protein -
  B1222_RS02915 (B1222_02900) ymfI 602620..603370 (-) 751 Protein_602 elongation factor P 5-aminopentanone reductase -
  B1222_RS02920 (B1222_02905) yfmH 603370..604656 (-) 1287 WP_077995488.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  B1222_RS02925 (B1222_02910) yfmF 604653..605938 (-) 1286 Protein_604 EF-P 5-aminopentanol modification-associated protein YfmF -
  B1222_RS02930 (B1222_02915) sleB 606105..606905 (-) 801 WP_023484666.1 spore cortex-lytic enzyme -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17045.70 Da        Isoelectric Point: 8.5151

>NTDB_id=218401 B1222_RS27010 WP_315861963.1 596185..596652(-) (cinA) [Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537]
MKAEIIAIGTELLLGQIVNTNAQYLAHECASMGIHVYFQTVVGDNRQRLLNVFKQAAGRADLIICTGGLGPTQDDLTKEV
LGEMLGRKIFLHEPSLQKIARQFKDRGIHMVESNKRQALTLEGARNLENKTGLAIGTALTDKDTHYLLLPGHQGK

Nucleotide


Download         Length: 468 bp        

>NTDB_id=218401 B1222_RS27010 WP_315861963.1 596185..596652(-) (cinA) [Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537]
TTGAAAGCAGAAATCATTGCAATCGGTACGGAACTTTTACTTGGGCAAATTGTTAACACGAATGCCCAGTATCTGGCTCA
TGAATGTGCTTCGATGGGGATCCATGTGTATTTCCAGACCGTAGTTGGGGATAATAGGCAAAGGTTGCTCAATGTATTCA
AGCAGGCGGCTGGACGTGCGGATCTTATCATTTGCACTGGCGGACTTGGGCCGACCCAGGATGATCTTACGAAAGAAGTA
CTGGGTGAAATGCTGGGACGTAAGATTTTTCTGCATGAACCCTCTCTCCAAAAGATCGCCCGGCAGTTTAAAGACCGGGG
CATCCATATGGTAGAGAGCAACAAAAGGCAGGCCCTTACGCTTGAAGGAGCACGAAACCTTGAGAATAAAACGGGTCTGG
CAATCGGCACGGCCCTGACAGATAAGGATACGCATTATTTACTCCTTCCGGGCCACCAAGGGAAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

50

98.065

0.49
  cinA Streptococcus mitis SK321

50

98.065

0.49
  cinA Streptococcus pneumoniae TIGR4

50

98.065

0.49
  cinA Streptococcus pneumoniae R6

49.342

98.065

0.484
  cinA Streptococcus pneumoniae Rx1

49.342

98.065

0.484
  cinA Streptococcus mutans UA159

49.342

98.065

0.484
  cinA Streptococcus pneumoniae D39

48.684

98.065

0.477
  cinA Streptococcus suis isolate S10

48.026

98.065

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

48

96.774

0.465

Multiple sequence alignment