Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BZG42_RS00430 Genome accession   NZ_CP019557
Coordinates   68964..70151 (+) Length   395 a.a.
NCBI ID   WP_165437161.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 63964..75151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS00410 (BZG42_00385) - 64108..65607 (+) 1500 WP_155996232.1 quinol oxidase -
  BZG42_RS00415 (BZG42_00390) mutL 65745..67682 (+) 1938 WP_155996231.1 DNA mismatch repair endonuclease MutL -
  BZG42_RS00420 (BZG42_00395) ruvA 67711..68301 (+) 591 WP_155969326.1 Holliday junction branch migration protein RuvA -
  BZG42_RS00425 (BZG42_00400) - 68351..68905 (+) 555 WP_024532323.1 DNA-3-methyladenine glycosylase I -
  BZG42_RS00430 (BZG42_00405) cinA 68964..70151 (+) 1188 WP_165437161.1 competence/damage-inducible protein A Machinery gene
  BZG42_RS00435 (BZG42_00410) recA 70198..71340 (+) 1143 WP_024532325.1 recombinase RecA Machinery gene
  BZG42_RS00440 (BZG42_00415) spx 71869..72267 (+) 399 WP_024532326.1 transcriptional regulator Spx -
  BZG42_RS00445 (BZG42_00420) - 72371..72637 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  BZG42_RS00450 (BZG42_00425) ruvX 72637..73056 (+) 420 WP_032537883.1 Holliday junction resolvase RuvX -
  BZG42_RS00455 (BZG42_00430) - 73068..73373 (+) 306 WP_024532328.1 DUF1292 domain-containing protein -
  BZG42_RS00460 (BZG42_00435) - 73698..74243 (+) 546 WP_236563891.1 nucleotidyltransferase family protein -
  BZG42_RS00465 (BZG42_00440) comX/sigX 74337..74807 (+) 471 WP_155996229.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 43207.34 Da        Isoelectric Point: 7.0472

>NTDB_id=216192 BZG42_RS00430 WP_165437161.1 68964..70151(+) (cinA) [Streptococcus sp. DAT741]
MKAELIAVGTEILTGQIVNTNTQFLSEKCAELGIDVYFHTSVGDNQGRLLQVLDIASRRSDLVILCGGLGPTEDDLTKQT
LARFLGKELVLDEQAKLKLDRFFASRPGRIRTPNNERQAQIVAGSTPLQNPAGLAVGGLIEQEGITYVVLPGPPSELKAM
FTTSLLPMLGNSHSQLYSRVLRFFGIGESQLVTILADLIDNQTNPTLAPYAKVGEVTLRLSTKATCQEEADQVLNRLETQ
ILQRDKLAEYFYAYGEENSLVKLVATSLAGKEQTLAVWEQGTGGLLQAELSLALAEQPYFIGGRVVGQKGAASGNLSVQA
SGIRDDLQADCRFSYVGFYQAVLNGRQRSCQDLTGLIKSFWSYSKGARFGRLFMATYPSTSLFTSSRFCTKYFVK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=216192 BZG42_RS00430 WP_165437161.1 68964..70151(+) (cinA) [Streptococcus sp. DAT741]
ATGAAAGCAGAACTAATCGCTGTTGGAACGGAGATTTTAACAGGGCAGATTGTTAATACGAATACTCAGTTTCTATCCGA
AAAATGTGCAGAGCTGGGAATTGATGTCTACTTCCACACAAGTGTTGGAGACAACCAAGGTAGACTTTTACAGGTGCTGG
ATATAGCCAGTAGACGCAGTGATTTGGTCATTCTATGTGGAGGTCTTGGCCCTACGGAAGATGATTTAACCAAACAAACA
TTAGCTCGATTTTTAGGGAAAGAATTAGTTTTGGATGAGCAGGCCAAGCTTAAATTAGACCGTTTTTTTGCTAGTCGTCC
AGGTCGTATTCGCACACCTAACAATGAACGTCAGGCACAGATTGTAGCAGGAAGTACCCCCTTGCAAAATCCTGCTGGTT
TAGCTGTTGGGGGATTGATTGAGCAAGAAGGAATAACCTATGTTGTACTTCCAGGCCCTCCGAGTGAGCTAAAAGCTATG
TTTACTACCAGTCTATTGCCGATGCTAGGCAATTCTCATAGCCAACTTTACTCACGGGTTCTGAGATTTTTTGGTATTGG
AGAAAGTCAGCTGGTGACGATTTTAGCAGATTTGATTGATAATCAGACTAATCCAACTTTAGCACCTTATGCTAAAGTCG
GTGAAGTCACCTTGCGCCTGTCTACCAAAGCTACTTGCCAAGAAGAAGCAGATCAAGTATTGAATCGTTTAGAAACACAA
ATTTTGCAACGTGATAAACTAGCAGAGTATTTCTATGCCTATGGTGAAGAAAATAGTCTGGTGAAATTGGTGGCGACCAG
CTTGGCGGGGAAAGAGCAAACTCTGGCTGTATGGGAACAGGGGACGGGTGGGCTCTTACAAGCAGAATTGAGTTTGGCGC
TGGCCGAACAGCCTTATTTTATCGGAGGTAGGGTTGTTGGTCAGAAAGGAGCTGCTTCGGGCAATTTGTCTGTTCAAGCA
AGCGGTATTCGTGACGATCTACAAGCCGATTGTAGGTTTAGCTATGTCGGTTTTTATCAAGCCGTCCTCAACGGTAGACA
ACGTTCTTGCCAAGATCTCACTGGCCTTATCAAGTCCTTCTGGAGTTATTCAAAAGGAGCTAGATTTGGGAGGTTATTCA
TGGCAACATATCCGTCAACTAGCTTGTTTACAAGCTCTAGATTTTGTACGAAATACTTTGTGAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

79.394

83.544

0.663
  cinA Streptococcus mitis SK321

67.419

78.481

0.529
  cinA Streptococcus mitis NCTC 12261

66.452

78.481

0.522
  cinA Streptococcus pneumoniae TIGR4

66.129

78.481

0.519
  cinA Streptococcus pneumoniae Rx1

66.129

78.481

0.519
  cinA Streptococcus pneumoniae R6

66.129

78.481

0.519
  cinA Streptococcus pneumoniae D39

65.806

78.481

0.516
  cinA Streptococcus mutans UA159

66.337

76.709

0.509
  cinA Bacillus subtilis subsp. subtilis str. 168

48.208

77.722

0.375

Multiple sequence alignment